YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346916, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	450 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346916, gi|....

Description	E-value	Query Range	Subject Range
gi\|67535384, gi\|... - gi\|67543205\|ref\|ZP_00421138.1\| Xanthine/uracil/vitamin C permease [Burkholderia vietnamiensis G4], g...	245.0	[0..2]	[446..125]
gi\|94314734, gi\|... - gi\|94314734\|ref\|YP_587943.1\| xanthine/uracil/vitamin C permease [Ralstonia metallidurans CH34], gi\|9...	231.0	[0..6]	[446..14]
gi\|90413686, gi\|... - gi\|90413686\|ref\|ZP_01221675.1\| putative transporter [Photobacterium profundum 3TCK], gi\|90325307\|gb\|...	230.0	[0..14]	[446..18]
gi\|54309433, gi\|... - gi\|54309433\|ref\|YP_130453.1\| putative transporter [Photobacterium profundum SS9], gi\|46913869\|emb\|CA...	230.0	[0..14]	[446..18]
gi\|62129968, gi\|... - gi\|62182335\|ref\|YP_218752.1\| xanthine/uracil permease family protein [Salmonella enterica subsp. ent...	229.0	[0..3]	[446..44]
gi\|16422424 - gi\|16422424\|gb\|AAL22709.1\| putative xanthine/uracil permeases family [Salmonella enterica subsp. ent... gi\|56415721, gi\|... - gi\|56415721\|ref\|YP_152796.1\| putative membrane transport protein [Salmonella enterica subsp. enteric... gi\|197364649, gi... - gi\|197364649\|ref\|YP_002144286.1\| putative membrane transport protein [Salmonella enterica subsp. ent...	229.0	[0..3]	[446..44]
gi\|16504783, gi\|... - gi\|25309459\|pir\|\|AH0956 probable membrane transport protein STY3932 [imported] - Salmonella enterica... gi\|29143966, gi\|... - gi\|29143966\|ref\|NP_807308.1\| putative membrane transport protein [Salmonella enterica subsp. enteric... gi\|16762478 - gi\|16762478\|ref\|NP_458095.1\| putative membrane transport protein [Salmonella enterica subsp. enteric...	229.0	[0..3]	[446..44]
gi\|113531013, gi... - gi\|116696514\|ref\|YP_842090.1\| major facilitator superfamily transporter AzgA family protein [Ralston...	228.0	[0..2]	[446..15]
gi\|26990975, gi\|... - gi\|26990975\|ref\|NP_746400.1\| xanthine/uracil/vitamin C permease [Pseudomonas putida KT2440], gi\|2498...	227.0	[0..14]	[446..20]
tr\|I7AZF4\|I7AZF4... - Xanthine/uracil/vitamin C permease OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_2257 PE=4 SV=1 gi\|82713590, gi\|... - gi\|82739342\|ref\|ZP_00902148.1\| transporter, putative [Pseudomonas putida F1], gi\|82713590\|gb\|EAP4869...	226.0	[0..14]	[446..20]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQLSSTAV PSGSFLNRFF SIQQRGSTVR QEVIAGLTTF LAMVYSVIVV PNMLGKAGFD  60
   61 PGAVFVATCL IAAFGSLLMG LWANLPMAIG CAISLTAFTA FGLVLGQGMS IPVTLGAIFW 120
  121 MGVIFTIVSV TGIRQWVLAN LPKGIAHGTG IGIGLFLLLI ATNSVQLIVA NDAGLPVKLG 180
  181 DINSLPVIAT VVGLAATIGL ERRGVPGGIL LVIIGLSLFG LVFD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [225-450]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSVKYQGLFA LPNLTSEHSL IGQLDIMGAL NPVVLPIVLA LVMTAIFDAT GTIRAVAGQA  60
   61 NLLDKDDNIV GGGKALTSDS VSSMFAGVVG GAPAAVYIES AAGTAAGGKT GLTATIVGVL 120
  121 FLLMVFLAPL SYLVPAYATA PALMYVGLLM LSNVTKLDFN DKVDAMAGLT CAVFIILSCN 180
  181 IVTGIMLGFV TLVIGRIFSG EWRQLKLGVL AITLGLVVFY MGGWAI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits