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View Structure Prediction Details

Protein: gi|24346560, gi|...
Organism: Shewanella oneidensis MR-1
Length: 189 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346560, gi|....

Description E-value Query
Range
Subject
Range
gi|33865747, gi|... - gi|33865747|ref|NP_897306.1| thioredoxin peroxidase [Synechococcus sp. WH 8102], gi|33632917|emb|CAE...
240.0 [0..4] [188..7]
gi|33634943, gi|... - gi|33863026|ref|NP_894586.1| thioredoxin peroxidase [Prochlorococcus marinus str. MIT 9313], gi|3363...
239.0 [0..1] [188..1]
gi|78184723, gi|... - gi|78184723|ref|YP_377158.1| thioredoxin peroxidase [Synechococcus sp. CC9902], gi|78169017|gb|ABB26...
239.0 [0..4] [188..10]
gi|116070595, gi... - gi|116070595|ref|ZP_01467864.1| thioredoxin peroxidase [Synechococcus sp. BL107], gi|116066000|gb|EA...
239.0 [0..4] [188..7]
gi|84512778, gi|... - gi|84518029|ref|ZP_01005378.1| thioredoxin peroxidase [Prochlorococcus marinus str. MIT 9211], gi|84...
238.0 [0..4] [188..6]
gi|116068112, gi... - gi|116074890|ref|ZP_01472151.1| thioredoxin peroxidase [Synechococcus sp. RS9916], gi|116068112|gb|E...
237.0 [0..4] [188..7]
gi|86167507, gi|... - gi|87124628|ref|ZP_01080476.1| thioredoxin peroxidase [Synechococcus sp. RS9917], gi|86167507|gb|EAQ...
237.0 [0..4] [188..7]
gi|60654143 - gi|60654143|gb|AAX29764.1| peroxiredoxin 2 [synthetic construct]
236.0 [0..1] [188..1]
gi|78197313, gi|... - gi|78212854|ref|YP_381633.1| thioredoxin peroxidase [Synechococcus sp. CC9605], gi|78197313|gb|ABB35...
236.0 [0..4] [188..7]
gi|60818622, gi|... - gi|61362999|gb|AAX42317.1| peroxiredoxin 2 [synthetic construct], gi|60818622|gb|AAX36471.1| peroxir...
PRDX2_MACFA - Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE=2 SV=3
gi|114675617 - gi|114675617|ref|XP_524127.2| PREDICTED: peroxiredoxin 2 [Pan troglodytes]
gi|109123563, gi... - gi|109123563|ref|XP_001109216.1| PREDICTED: peroxiredoxin 2 isoform 5 [Macaca mulatta], gi|109123561...
PRDX2 - peroxiredoxin 2
236.0 [0..1] [188..1]

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Predicted Domain #1
Region A:
Residues: [1-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQSIINSTI KPFKATAYHN GEFVPVTEQD LLGKWSVVFF YPADFTFVCP TELGDMADHY  60
   61 AKLQGMGVEV YSVSTDTHFT HKAWHDTSDT IKKINFPMLA DPTGTISRNF GVMIEEEGLA 120
  121 LRGTFVINPE GQIKVAEIHD LGIGRSAQEL VRKIQAAQYV ATHDGEVCPA KWQPGDETLA 180
  181 PSLDLVGKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.522879
Match: 1yepA
Description: Structural and biochemical analysis of the link between enzymatic activity and olgomerization in AhpC, a bacterial peroxiredoxin.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
alkyl hydroperoxide reductase activity 4.29610283853788 bayes_pls_golite062009
antioxidant activity 3.8464796631544 bayes_pls_golite062009
peroxidase activity 3.43831566988273 bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor 3.43831566988273 bayes_pls_golite062009
selenium binding 2.92496040718744 bayes_pls_golite062009
glutathione peroxidase activity 2.56524997297011 bayes_pls_golite062009
transcription regulator activity 2.30799114442278 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 2.23310780102446 bayes_pls_golite062009
peroxiredoxin activity 2.12777217096121 bayes_pls_golite062009
thioredoxin peroxidase activity 1.96134566495756 bayes_pls_golite062009
protein disulfide oxidoreductase activity 1.47769936616412 bayes_pls_golite062009
disulfide oxidoreductase activity 1.32811008894503 bayes_pls_golite062009
transferase activity 1.26687471229876 bayes_pls_golite062009
binding 1.25802922431343 bayes_pls_golite062009
protein binding 1.18479617596618 bayes_pls_golite062009
molecular transducer activity 1.11518182894524 bayes_pls_golite062009
signal transducer activity 1.11518182894524 bayes_pls_golite062009
catalytic activity 0.672192331361968 bayes_pls_golite062009
peptide binding 0.374493676068876 bayes_pls_golite062009
0.359224524631956 bayes_pls_golite062009
NADH dehydrogenase activity 0.23291471505999 bayes_pls_golite062009
copper ion binding 0.178842772364502 bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity 0.16328723676608 bayes_pls_golite062009
NADH dehydrogenase (quinone) activity 0.0434052164026002 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle