YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346550, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346550, gi|....

Description	E-value	Query Range	Subject Range
gi\|126173089, gi... - gi\|68541402\|ref\|ZP_00581146.1\| thiol:disulfide interchange protein DsbC [Shewanella baltica OS155], ...	230.0	[0..1]	[241..1]
gi\|113947345, gi... - gi\|160876748\|ref\|YP_001556064.1\| thiol:disulfide interchange protein DsbC [Shewanella baltica OS195]... gi\|149115358, gi... - gi\|217974604\|ref\|YP_002359355.1\| thiol:disulfide interchange protein DsbC [Shewanella baltica OS223]... gi\|153002032, gi... - gi\|153002032\|ref\|YP_001367713.1\| thiol:disulfide interchange protein DsbC [Shewanella baltica OS185]...	230.0	[0..1]	[241..1]
gi\|120560169, gi... - gi\|82740523\|ref\|ZP_00903262.1\| thiol:disulfide interchange protein DsbC [Shewanella sp. W3-18-1], gi... gi\|77813093, gi\|... - gi\|77813093\|ref\|ZP_00812374.1\| DSBA oxidoreductase [Shewanella putrefaciens CN-32], gi\|77811928\|gb\|E...	225.0	[0..1]	[241..1]
gi\|78365781, gi\|... - gi\|78365781\|ref\|ZP_00836065.1\| thiol:disulfide interchange protein DsbC [Shewanella sp. PV-4], gi\|78...	220.0	[0..1]	[241..1]
gi\|117921768, gi... - gi\|78684649\|ref\|ZP_00849432.1\| thiol:disulfide interchange protein DsbC [Shewanella sp. ANA-3], gi\|7...	215.0	[0..1]	[241..1]
gi\|82495103, gi\|... - gi\|82495103\|ref\|ZP_00880681.1\| thiol:disulfide interchange protein DsbC [Shewanella sp. MR-4], gi\|82... gi\|114048717, gi... - gi\|78688817\|ref\|ZP_00853484.1\| thiol:disulfide interchange protein DsbC [Shewanella sp. MR-7], gi\|78...	214.0	[0..1]	[241..1]
gi\|77958936 - gi\|77958936\|ref\|ZP_00822962.1\| COG1651: Protein-disulfide isomerase [Yersinia bercovieri ATCC 43970]	214.0	[0..4]	[241..1]
gi\|167994106, gi... - gi\|205328012\|gb\|EDZ14776.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp. ent... gi\|197243173, gi... - gi\|197264918\|ref\|ZP_03164992.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp.... lcl\|NC_016856.1_... - [gene=dsbC] [protein=thiol:disulfide interchange protein DsbC] [protein_id=YP_005239178.1] [location... DSBC_SALTY - Thiol:disulfide interchange protein DsbC OS=Salmonella typhimurium GN=dsbC PE=3 SV=2 DSBC_SALTY - Thiol:disulfide interchange protein DsbC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700... DSBC_SALTY - Thiol:disulfide interchange protein dsbC OS=Salmonella typhimurium GN=dsbC PE=3 SV=2	214.0	[0..4]	[241..1]
gi\|194447563, gi... - gi\|194447563\|ref\|YP_002047027.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp... gi\|194456085, gi... - gi\|194470147\|ref\|ZP_03076131.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp.... gi\|16761824 - gi\|16761824\|ref\|NP_457441.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp. en... gi\|194735767, gi... - gi\|194735767\|ref\|YP_002115992.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp... gi\|197249732, gi... - gi\|197249732\|ref\|YP_002147955.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp... gi\|205324894, gi... - gi\|205324894\|gb\|EDZ12733.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp. ent... gi\|205334534, gi... - gi\|205334534\|gb\|EDZ21298.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp. ent... gi\|197290867, gi... - gi\|197290867\|gb\|EDY30221.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp. ent... gi\|56414989, gi\|... - gi\|56414989\|ref\|YP_152064.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp. en... gi\|205337960, gi... - gi\|205337960\|gb\|EDZ24724.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp. ent... gi\|161615990, gi... - gi\|161615990\|ref\|YP_001589955.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp... gi\|238909842 - gi\|238909842\|ref\|ZP_04653679.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp.... gi\|213425822 - gi\|213425822\|ref\|ZP_03358572.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp.... gi\|213583108 - gi\|213583108\|ref\|ZP_03364934.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp.... gi\|213646963 - gi\|213646963\|ref\|ZP_03377016.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp.... gi\|213999406 - gi\|213999406\|ref\|ZP_03410141.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp.... gi\|25292655, gi\|... - gi\|25292655\|pir\|\|AI0871 thiol,disulfide interchange protein [imported] - Salmonella enterica subsp. ... gi\|197937385, gi... - gi\|198242869\|ref\|YP_002217020.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp... gi\|29138945, gi\|... - gi\|29143311\|ref\|NP_806653.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp. en... gi\|199603599, gi... - gi\|200386501\|ref\|ZP_03213113.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp.... gi\|204928126, gi... - gi\|204928126\|ref\|ZP_03219326.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp.... gi\|213051987 - gi\|213051987\|ref\|ZP_03344865.1\| thiol:disulfide interchange protein DsbC [Salmonella enterica subsp....	213.0	[0..4]	[241..1]
gi\|77978909, gi\|... - gi\|77978909\|ref\|ZP_00834332.1\| COG1651: Protein-disulfide isomerase [Yersinia intermedia ATCC 29909]...	212.0	[0..4]	[241..1]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLTRALSLV FALVVAPLAS AATATTPDTA AIKQKLSEML DVEVISMQDS PIEGLYQAMT  60
   61 NRGVLYISRD GSKMFHGNLY DLDKGMKNLT EAALAGPRLA MMKPLEDHML VYKAKDEKHV 120
  121 VTVFTDVSCG YCRKLHSQMA DYNKLGITVR YLAFPRAGVP SANADEMQAI WCAKDPLKAM 180
  181 TEAKAGKKVS AASCDAKIAE QYQLGNSFGV NGTPAIVLED GNMIPGYQPP EDLLRTLEAR 240
  241 Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	1eejA
Description:	Disulfide bond isomerase, DsbC, C-terminal domain; Disulfide bond isomerase, DsbC, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein disulfide isomerase activity	1.48801287843472	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing S-S bonds	1.48801287843472	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting keto- and enol-groups	1.37876060576659	bayes_pls_golite062009
catalytic activity	1.04263226837398	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	0.25957505753521	bayes_pls_golite062009
isomerase activity	0.24662332270942	bayes_pls_golite062009
disulfide oxidoreductase activity	0.22354310938224	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: