YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346548, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	462 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346548, gi|....

Description	E-value	Query Range	Subject Range
gi\|152975342, gi... - gi\|89202735\|ref\|ZP_01181447.1\| Branched-chain amino acid transport system II carrier protein [Bacill...	458.0	[0..1]	[453..25]
gi\|75762736, gi\|... - gi\|75762736\|ref\|ZP_00742568.1\| Branched chain amino acid transport system II carrier protein [Bacill...	456.0	[0..1]	[453..10]
gi\|29895523, gi\|... - gi\|30019978\|ref\|NP_831609.1\| branched chain amino acid ABC transporter carrier protein [Bacillus cer...	455.0	[0..6]	[461..16]
gi\|49477434, gi\|... - gi\|49477434\|ref\|YP_036083.1\| branched-chain amino acid transport system carrier protein [Bacillus th...	454.0	[0..6]	[461..10]
gi\|52143505, gi\|... - gi\|52143505\|ref\|YP_083324.1\| branched-chain amino acid transport system carrier protein [Bacillus ce...	454.0	[0..6]	[461..10]
gi\|89153322, gi\|... - gi\|89208760\|ref\|ZP_01187249.1\| Branched-chain amino acid transport system II carrier protein [Bacill...	454.0	[0..1]	[453..10]
gi\|165869085, gi... - gi\|165869085\|ref\|ZP_02213745.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|167637207, gi... - gi\|167637207\|ref\|ZP_02395487.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|170670973, gi... - gi\|170684713\|ref\|ZP_02875938.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|170130003, gi... - gi\|170705148\|ref\|ZP_02895613.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|177649967, gi... - gi\|177649967\|ref\|ZP_02932968.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|190564849, gi... - gi\|190564849\|ref\|ZP_03017770.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|65320394, gi\|... - gi\|65320394\|ref\|ZP_00393353.1\| COG1114: Branched-chain amino acid permeases [Bacillus anthracis str.... gi\|254760977 - gi\|254760977\|ref\|ZP_05213001.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|254752459 - gi\|254752459\|ref\|ZP_05204495.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|254738145 - gi\|254738145\|ref\|ZP_05195848.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|254685678 - gi\|254685678\|ref\|ZP_05149537.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|229266184, gi... - gi\|229601776\|ref\|YP_002867356.1\| branched-chain amino acid transport system II carrier protein [Baci... gi\|49185926, gi\|... - gi\|49185926\|ref\|YP_029178.1\| branched-chain amino acid transport system II carrier protein [Bacillus... gi\|227004881, gi... - gi\|227814063\|ref\|YP_002814072.1\| branched-chain amino acid transport system II carrier protein [Baci... gi\|47503580, gi\|... - gi\|47528432\|ref\|YP_019781.1\| branched chain amino acid ABC transporter carrier protein [Bacillus ant... gi\|30263086, gi\|... - gi\|30263086\|ref\|NP_845463.1\| branched-chain amino acid transport system II carrier protein [Bacillus...	454.0	[0..6]	[462..10]
gi\|254737098 - gi\|254737098\|ref\|ZP_05194802.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|49184927, gi\|... - gi\|49184927\|ref\|YP_028179.1\| branched-chain amino acid transport system II carrier protein [Bacillus... gi\|254758286 - gi\|254758286\|ref\|ZP_05210313.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|254751414 - gi\|254751414\|ref\|ZP_05203451.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|254739426 - gi\|254739426\|ref\|ZP_05197125.1\| branched-chain amino acid transport system II carrier protein [Bacil...	452.0	[0..1]	[453..8]

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Predicted Domain #1

Region A:
Residues: [1-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFGDTLGLG FMTFAFFLGA GNLIFPPFAG MLAGENMLLA MLGFLITAVG LPLVGLIAVA  60
   61 KAQGKVMAML PVFAATALAI AIYIIIGPAF AAPRTGLVAY EIGAKPFIDN TTATIMLGSL 120
  121 SLNLSQLIYT LGFFIVTMLL ALFPGKLLDS VGKVLTPILL LLLVGLALSV LFLPASEVGV 180
  181 AVGDYKNHPL TKGILEGYNT MDTLASLMFG MLIIDLLRKK GIEQPSAQTK YLIRAAFIAA 240
  241 AGLAFVYVSL FFLGATAGDI AAGAKNGGEI LTNYVTREFG SLGTVLLSAV VTLACLTTAV 300
  301 GLVSACSEFF NELMPKLSYR FLVVALSAIC ALIANVGLSQ LINISIPVLM AVYPVAIALV 360
  361 AVTFLTEYFP RP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.11
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [373-462]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFAHRAALSV ALLFGIFDGM KVAAKSLTGE DGRGITEFAQ SFIDFVNGMS PTLSILPLYE  60
   61 EGMAWLLPTL VVIVLCLIIR GSGAKTVSAA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits