YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346283, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346283, gi|....

Description	E-value	Query Range	Subject Range
gi\|17385642 - gi\|17385642\|dbj\|BAB32446.2\| glutathione S-transferase [Matricaria chamomilla]	162.0	[0..3]	[196..8]
gi\|2052029, gi\|7... - pir\|\|T07156 probable glutathione transferase (EC 2.5.1.18) - soybean, gi\|2052029\|emb\|CAA71784.1\| glu...	160.0	[0..3]	[197..7]
gi\|11385535 - gi\|11385535\|gb\|AAG34850.1\|AF244707_1 glutathione S-transferase GST 42 [Zea mays]	160.0	[0..1]	[197..7]
gi\|186686120, gi... - gi\|23126441\|ref\|ZP_00108337.1\| COG0625: Glutathione S-transferase [Nostoc punctiforme PCC 73102], gi...	159.0	[0..1]	[195..3]
gi\|1737447 - gi\|1737447\|gb\|AAB38965.1\| auxin-induced protein [Eucalyptus globulus]	157.0	[0..2]	[197..6]
gi\|21592638 - gi\|21592638\|gb\|AAM64587.1\| 2,4-D inducible glutathione S-transferase, putative [Arabidopsis thaliana...	157.0	[0..2]	[197..6]

Back

Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLCSLASP YARCVRSLIR YLGIEDIEEV LVNPMENTAQ LLDVNPLGQI PCLITNDGVP  60
   61 IFDSEVIMRY LDTELGAQEM FGGQPYNWVL QCQYSMIKGL IDSAVKLRQE QMREEEGVRS 120
  121 AFWTSRFEQA LLRGLMQMEH QSVITQTTIQ APQLTLICLL DYVDFRHPEL DWRKVAPATA 180
  181 IWFSEMRDLP AFVETRPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.221849
Match:	1aw9A
Description:	STRUCTURE OF GLUTATHIONE S-TRANSFERASE III IN APO FORM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.04263226837398	bayes_pls_golite062009
antioxidant activity	0.92550006805966	bayes_pls_golite062009
peroxidase activity	0.62384958394125	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	0.62384958394125	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: