YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346184, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346184, gi|....

Description	E-value	Query Range	Subject Range
gi\|241909490, gi... - gi\|241909490\|ref\|ZP_04794026.1\| phage virion morphogenesis protein [Desulfovibrio vulgaris RCH1], gi... gi\|46581112, gi\|... - gi\|46581112\|ref\|YP_011920.1\| virion morphogenesis protein [Desulfovibrio vulgaris subsp. vulgaris st...	151.0	[0..4]	[149..2]
gi\|113906960, gi... - gi\|160875251\|ref\|YP_001554567.1\| phage virion morphogenesis protein [Shewanella baltica OS195], gi\|1...	149.0	[0..1]	[149..1]
VPG2_HAEIN - Mu-like prophage FluMu G protein 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 /... VPG2_HAEIN - Mu-like prophage FluMu G protein 2 OS=Haemophilus influenzae GN=HI_1568 PE=4 SV=1	149.0	[0..1]	[149..1]
gi\|33147940, gi\|... - gi\|33151719\|ref\|NP_873072.1\| mu-like bacteriophage G protein 2 [Haemophilus ducreyi 35000HP], gi\|331...	147.0	[0..1]	[148..1]
gi\|57904722 - gi\|57904722\|gb\|AAW58967.1\| G protein [Cloning vector MuNXKan] GPG_BPMU - Putative capsid assembly protein G OS=Enterobacteria phage Mu GN=G PE=2 SV=1	145.0	[0..3]	[150..4]
gi\|188488747, gi... - gi\|75513091\|ref\|ZP_00735553.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli 53638], gi\|18...	144.0	[0..3]	[150..4]
gi\|194430108, gi... - gi\|75208648\|ref\|ZP_00708952.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli B171], gi\|194...	144.0	[0..3]	[150..4]
gi\|168826957, gi... - gi\|32029862\|ref\|ZP_00132816.1\| COG5005: Mu-like prophage protein gpG [Haemophilus somnus 2336], gi\|1...	136.0	[0..1]	[149..1]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVEIVLSD SPVLQVLGSL LDKLDDFSEP MNYIAGVLES ATEGAFEAEA DPVTGQAWQS  60
   61 LSDAYLKANP KRQGGKILQA SAGGLAASVT ADSGDFWAAI GSNKIYAAIH QFGGTDDMPA 120
  121 GPAGIPSRPY LGVSREDEQS MLGILGEYLS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.49485
Match:	PF05069.4
Description:	No description for PF05069.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits