YRC Public Data Repository - Protein Structure Prediction

Protein:	PRPC_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	375 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRPC_SHEON.

Description	E-value	Query Range	Subject Range
gi\|69275084, gi\|... - gi\|69275084\|ref\|ZP_00610996.1\| Citrate synthase I [Mesorhizobium sp. BNC1], gi\|68193524\|gb\|EAN08176....	498.0	[0..3]	[375..38]
gi\|23502026, gi\|... - gi\|23502026\|ref\|NP_698153.1\| type II citrate synthase [Brucella suis 1330], gi\|23347979\|gb\|AAN30068.... gi\|161511146 - gi\|161511146\|ref\|NP_539753.2\| type II citrate synthase [Brucella melitensis 16M] gi\|254719211 - gi\|254719211\|ref\|ZP_05181022.1\| type II citrate synthase [Brucella sp. 83/13] gi\|161619100, gi... - gi\|161619100\|ref\|YP_001592987.1\| type II citrate synthase [Brucella canis ATCC 23365], gi\|161335911\|... gi\|254714219 - gi\|254714219\|ref\|ZP_05176030.1\| type II citrate synthase [Brucella ceti M644/93/1] gi\|254717655 - gi\|254717655\|ref\|ZP_05179466.1\| type II citrate synthase [Brucella ceti M13/05/1] gi\|225852646, gi... - gi\|225852646\|ref\|YP_002732879.1\| citrate synthase I [Brucella melitensis ATCC 23457], gi\|225641011\|g... gi\|254706669 - gi\|254706669\|ref\|ZP_05168497.1\| type II citrate synthase [Brucella pinnipedialis M163/99/10] gi\|254710223 - gi\|254710223\|ref\|ZP_05172034.1\| type II citrate synthase [Brucella pinnipedialis B2/94] gi\|254701889 - gi\|254701889\|ref\|ZP_05163717.1\| type II citrate synthase [Brucella suis bv. 5 str. 513] gi\|254704435 - gi\|254704435\|ref\|ZP_05166263.1\| type II citrate synthase [Brucella suis bv. 3 str. 686]	495.0	[0..6]	[375..41]
gi\|17982781, gi\|... - gi\|17987119\|ref\|NP_539753.1\| citrate synthase [Brucella melitensis 16M], gi\|17982781\|gb\|AAL52017.1\| ... gi\|25291252 - pir\|\|AF3356 citrate (si)-synthase (EC 4.1.3.7) [imported] - Brucella melitensis (strain 16M) gi\|225627616, gi... - gi\|225627616\|ref\|ZP_03785653.1\| citrate synthase I [Brucella ceti str. Cudo], gi\|225617621\|gb\|EEH146...	495.0	[0..6]	[375..48]
CISY_RHIME - Citrate synthase OS=Rhizobium meliloti GN=gltA PE=3 SV=2 CISY_RHIME - Citrate synthase OS=Rhizobium meliloti (strain 1021) GN=gltA PE=3 SV=2	494.0	[0..3]	[375..38]
gi\|86281649, gi\|... - gi\|86357547\|ref\|YP_469439.1\| type II citrate synthase [Rhizobium etli CFN 42], gi\|86281649\|gb\|ABC907...	494.0	[0..2]	[375..37]
gi\|13470829, gi\|... - gi\|14021572\|dbj\|BAB48184.1\| citrate synthase [Mesorhizobium loti MAFF303099], gi\|13470829\|ref\|NP_102...	494.0	[0..2]	[375..41]
gi\|82616088 - gi\|82616088\|emb\|CAJ11126.1\| Citrate synthase [Brucella melitensis biovar Abortus 2308] gi\|254689372 - gi\|254689372\|ref\|ZP_05152626.1\| type II citrate synthase [Brucella abortus bv. 6 str. 870] gi\|189024301, gi... - gi\|189024301\|ref\|YP_001935069.1\| Citrate synthase [Brucella abortus S19], gi\|189019873\|gb\|ACD72595.1... gi\|254730402 - gi\|254730402\|ref\|ZP_05188980.1\| type II citrate synthase [Brucella abortus bv. 4 str. 292] gi\|254693856 - gi\|254693856\|ref\|ZP_05155684.1\| type II citrate synthase [Brucella abortus bv. 3 str. Tulya] gi\|254697505 - gi\|254697505\|ref\|ZP_05159333.1\| type II citrate synthase [Brucella abortus bv. 2 str. 86/8/59] gi\|62290061, gi\|... - gi\|62290061\|ref\|YP_221854.1\| type II citrate synthase [Brucella abortus bv. 1 str. 9-941], gi\|621961... gi\|82699987 - gi\|82699987\|ref\|YP_414561.1\| type II citrate synthase [Brucella melitensis biovar Abortus 2308]	494.0	[0..6]	[375..41]
CISY2_RHITR - Citrate synthase, plasmid OS=Rhizobium tropici GN=pcsA PE=3 SV=1	494.0	[0..3]	[375..38]
CISY_BARHE - Citrate synthase OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=gltA PE=3 SV=... CISY_BARHE - Citrate synthase OS=Bartonella henselae GN=gltA PE=3 SV=1	494.0	[0..3]	[375..38]
gi\|115256638, gi... - gi\|116251990\|ref\|YP_767828.1\| type II citrate synthase [Rhizobium leguminosarum bv. viciae 3841], gi...	494.0	[0..2]	[375..37]

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Predicted Domain #1

Region A:
Residues: [1-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDAKKLTGA GLRGQSAGET ALSTVGVSGS GLTYRGYDVK DLAENATFEE VAYLILYGEL  60
   61 PTTAQLAAYK TKLKGMRGLP QALKEVLERI PADAHPMDVM RTGCSMLGNL EAEHSFSEQS 120
  121 QIADRLLAAF PSIICYWYRF SHDGVRIDTE TDDDQIGAHF LHLLHGKAPS ALHTKVMDVS 180
  181 LILYAEHEFN ASTFTARVCA STLSDMHSCV TGAIGSLRGP LHGGANEAAM ELIQDMKDEA 240
  241 DARDVLMGKL ERKEKIMGFG HAIYRDSDPR NAIIKEWSEK LAADYGDDRL YRVSVACEAL 300
  301 MWEQKKLFCN ADFFHASAYH FMGIPTKLFT PIFVCSRVTG WTAHVMEQRS NNRIIRPSAD 360
  361 YVGVSPRKVI PIANR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	124.0
Match:	1vgpA
Description:	Crystal Structure of an Isozyme of Citrate Synthase from Sulfolbus tokodaii strain7
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits