YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345769, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345769, gi|....

Description	E-value	Query Range	Subject Range
gi\|82737393, gi\|... - gi\|82737393\|ref\|ZP_00900243.1\| thiol:disulfide interchange protein, DsbA family [Pseudomonas putida ... tr\|I7CBH6\|I7CBH6... - Thiol:disulfide interchange protein OS=Pseudomonas putida (strain DOT-T1E) GN=dsbA PE=3 SV=1	163.0	[0..1]	[202..1]
gi\|86147142, gi\|... - gi\|86147142\|ref\|ZP_01065458.1\| thiol:disulfide interchange protein [Vibrio sp. MED222], gi\|85835026\|...	163.0	[0..1]	[202..1]
gi\|24981474, gi\|... - gi\|26986872\|ref\|NP_742297.1\| DsbA family thiol:disulfide interchange protein [Pseudomonas putida KT2...	162.0	[0..1]	[202..1]
gi\|37200172, gi\|... - gi\|37681420\|ref\|NP_936029.1\| thiol:disulfide interchange protein [Vibrio vulnificus YJ016], gi\|37200...	162.0	[0..1]	[202..1]
gi\|27364469, gi\|... - gi\|27364469\|ref\|NP_759997.1\| Thiol-disulfide isomerase and thioredoxins [Vibrio vulnificus CMCP6], g...	162.0	[0..1]	[202..1]
gi\|84393428, gi\|... - gi\|84393428\|ref\|ZP_00992185.1\| thiol:disulfide interchange protein [Vibrio splendidus 12B01], gi\|843...	162.0	[0..1]	[202..1]
gi\|254851598, gi... - gi\|254851598\|ref\|ZP_05240948.1\| thiol:disulfide interchange protein [Vibrio cholerae MO10], gi\|25484... DSBA_VIBCH - Thiol:disulfide interchange protein DsbA OS=Vibrio cholerae GN=dsbA PE=1 SV=2 DSBA_VIBCH - Thiol:disulfide interchange protein DsbA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor ... gi\|126520570, gi... - gi\|153821950\|ref\|ZP_01974617.1\| thiol:disulfide interchange protein [Vibrio cholerae B33], gi\|126520...	160.0	[0..1]	[200..1]
gi\|126511851, gi... - gi\|153817583\|ref\|ZP_01970250.1\| thiol:disulfide interchange protein [Vibrio cholerae NCTC 8457], gi\|... gi\|155287 - gi\|155287\|gb\|AAA27568.1\| disulfide isomerase [Vibrio cholerae] gi\|150422950, gi... - gi\|254291105\|ref\|ZP_04961902.1\| thiol:disulfide interchange protein [Vibrio cholerae AM-19226], gi\|1... gi\|227008159, gi... - gi\|227080271\|ref\|YP_002808822.1\| thiol:disulfide interchange protein [Vibrio cholerae M66-2], gi\|227... gi\|148874382, gi... - gi\|153830118\|ref\|ZP_01982785.1\| thiol:disulfide interchange protein [Vibrio cholerae 623-39], gi\|148... gi\|153826418, gi... - gi\|153826418\|ref\|ZP_01979085.1\| thiol:disulfide interchange protein [Vibrio cholerae MZO-2], gi\|1497... gi\|147673950, gi... - gi\|227116513\|ref\|YP_002818409.1\| thiol:disulfide interchange protein [Vibrio cholerae O395], gi\|2270... gi\|121548497, gi... - gi\|121587251\|ref\|ZP_01677024.1\| thiol:disulfide interchange protein [Vibrio cholerae 2740-80], gi\|12... gi\|153212942, gi... - gi\|153212942\|ref\|ZP_01948536.1\| thiol:disulfide interchange protein [Vibrio cholerae 1587], gi\|12411... gi\|121727875, gi... - gi\|121727875\|ref\|ZP_01680934.1\| thiol:disulfide interchange protein [Vibrio cholerae V52], gi\|121629... gi\|153802774, gi... - gi\|153802774\|ref\|ZP_01957360.1\| thiol:disulfide interchange protein [Vibrio cholerae MZO-3], gi\|1241... gi\|153224315, gi... - gi\|153224315\|ref\|ZP_01954372.1\| thiol:disulfide interchange protein [Vibrio cholerae MAK 757], gi\|12...	160.0	[0..1]	[200..1]
gi\|116188883, gi... - gi\|75829913\|ref\|ZP_00759202.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Vibrio cholerae ... gi\|229606593, gi... - gi\|229606593\|ref\|YP_002877241.1\| periplasmic thiol:disulfide interchange protein DsbA [Vibrio choler... gi\|229517113, gi... - gi\|229517113\|ref\|ZP_04406559.1\| periplasmic thiol:disulfide interchange protein DsbA [Vibrio cholera... gi\|229354117, gi... - gi\|229508842\|ref\|ZP_04398333.1\| periplasmic thiol:disulfide interchange protein DsbA [Vibrio cholera...	160.0	[0..1]	[200..5]
gi\|229342800, gi... - gi\|229520206\|ref\|ZP_04409633.1\| periplasmic thiol:disulfide interchange protein DsbA [Vibrio cholera... gi\|229515927, gi... - gi\|229515927\|ref\|ZP_04405384.1\| periplasmic thiol:disulfide interchange protein DsbA [Vibrio cholera... gi\|229354592, gi... - gi\|229508319\|ref\|ZP_04397823.1\| periplasmic thiol:disulfide interchange protein DsbA [Vibrio cholera... gi\|229338517, gi... - gi\|229524936\|ref\|ZP_04414341.1\| periplasmic thiol:disulfide interchange protein DsbA [Vibrio cholera... gi\|75816172 - gi\|75816172\|ref\|ZP_00746650.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Vibrio cholerae ... gi\|75828115 - gi\|75828115\|ref\|ZP_00757550.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Vibrio cholerae ...	159.0	[0..1]	[200..5]

Back

Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKALLMAAA LLLAPLTVSA AEYKEGVHYT VINDGPATAK PEITEFFSFY CPHCYTFSKT  60
   61 VVPKILAEKP AGVEFNQAHV DFIGKEMGIE MSRAFAVAHQ LNVNEKIDTA LFTAIHDKKQ 120
  121 HFTSRDDVRA LFVANGVDGK TFDAAADSFM VKAQMSKMKR DTENAKLTGV PALVVNGKYR 180
  181 VETGAIKSYD ELLDIAYYLA RK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	2ijyA
Description:	No description for 2ijyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits