YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371912, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	720 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371912, gi|....

Description	E-value	Query Range	Subject Range
gi\|23467590, gi\|... - gi\|23467590\|ref\|ZP_00123170.1\| COG1982: Arginine/lysine/ornithine decarboxylases [Haemophilus somnus...	603.0	[0..1]	[720..1]
gi\|170718583, gi... - gi\|53728738\|ref\|ZP_00131860.2\| COG1982: Arginine/lysine/ornithine decarboxylases [Haemophilus somnus...	602.0	[0..1]	[720..1]
gi\|53733349 - gi\|53733349\|ref\|ZP_00156415.2\| COG1982: Arginine/lysine/ornithine decarboxylases [Haemophilus influe... gi\|145638490, gi... - gi\|145638490\|ref\|ZP_01794099.1\| recombination regulator RecX [Haemophilus influenzae PittII], gi\|145... gi\|145629780, gi... - gi\|145629780\|ref\|ZP_01785575.1\| ornithine decarboxylase [Haemophilus influenzae 22.1-21], gi\|1449780...	596.0	[0..1]	[720..1]
gi\|82743104, gi\|... - gi\|82743104\|ref\|ZP_00905770.1\| Ornithine decarboxylase [Shewanella sp. W3-18-1], gi\|82719553\|gb\|EAP5... gi\|146294762, gi... - gi\|77813511\|ref\|ZP_00812786.1\| Ornithine decarboxylase [Shewanella putrefaciens CN-32], gi\|77811602\|... gi\|124548478, gi... - gi\|124548478\|ref\|ZP_01707119.1\| Orn/Lys/Arg decarboxylase, major region [Shewanella putrefaciens 200...	595.0	[0..1]	[720..1]
DCOR_HAEIN - Ornithine decarboxylase OS=Haemophilus influenzae GN=speF PE=3 SV=1 DCOR_HAEIN - Ornithine decarboxylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=spe...	594.0	[0..1]	[720..1]
gi\|126512737, gi... - gi\|153816718\|ref\|ZP_01969385.1\| ornithine decarboxylase, inducible [Vibrio cholerae NCTC 8457], gi\|1... gi\|229510341, gi... - gi\|229510341\|ref\|ZP_04399821.1\| ornithine decarboxylase [Vibrio cholerae B33], gi\|229352786\|gb\|EEO17... gi\|125619905, gi... - gi\|75831866\|ref\|ZP_00761126.1\| COG1982: Arginine/lysine/ornithine decarboxylases [Vibrio cholerae MO... gi\|227011769, gi... - gi\|227812627\|ref\|YP_002812637.1\| ornithine decarboxylase [Vibrio cholerae M66-2], gi\|227011769\|gb\|AC... gi\|146313837, gi... - gi\|75825096\|ref\|ZP_00754532.1\| COG1982: Arginine/lysine/ornithine decarboxylases [Vibrio cholerae O3... gi\|229505804, gi... - gi\|229505804\|ref\|ZP_04395313.1\| ornithine decarboxylase [Vibrio cholerae BX 330286], gi\|229356155\|gb... gi\|121726638, gi... - gi\|75816632\|ref\|ZP_00747097.1\| COG1982: Arginine/lysine/ornithine decarboxylases [Vibrio cholerae V5... gi\|229517527, gi... - gi\|229517527\|ref\|ZP_04406972.1\| ornithine decarboxylase [Vibrio cholerae RC9], gi\|229345563\|gb\|EEO10... gi\|229371823, gi... - gi\|229605337\|ref\|YP_002876041.1\| ornithine decarboxylase [Vibrio cholerae MJ-1236], gi\|229371823\|gb\|... gi\|15601814, gi\|... - gi\|9658508\|gb\|AAF96957.1\| ornithine decarboxylase, inducible [Vibrio cholerae O1 biovar eltor str. N... gi\|121548595, gi... - gi\|121587156\|ref\|ZP_01676931.1\| ornithine decarboxylase, inducible [Vibrio cholerae 2740-80], gi\|121... gi\|11280590 - pir\|\|E82384 ornithine decarboxylase, inducible VCA1063 [imported] - Vibrio cholerae (strain N16961 s... gi\|153220514, gi... - gi\|153220514\|ref\|ZP_01951648.1\| ornithine decarboxylase, inducible [Vibrio cholerae MAK 757], gi\|124...	593.0	[0..1]	[719..1]
gi\|125999475, gi... - gi\|68540954\|ref\|ZP_00580702.1\| Ornithine decarboxylase [Shewanella baltica OS155], gi\|68521339\|gb\|EA...	592.0	[0..1]	[720..1]
gi\|78689307, gi\|... - gi\|78689307\|ref\|ZP_00853970.1\| Ornithine decarboxylase [Shewanella sp. MR-7], gi\|78511242\|gb\|EAP2460...	592.0	[0..1]	[720..1]
gi\|116217648, gi... - gi\|75824370\|ref\|ZP_00753826.1\| COG1982: Arginine/lysine/ornithine decarboxylases [Vibrio cholerae RC...	592.0	[0..1]	[719..1]
gi\|194538120, gi... - gi\|75820752\|ref\|ZP_00750792.1\| COG1982: Arginine/lysine/ornithine decarboxylases [Vibrio cholerae V5...	592.0	[0..1]	[719..1]

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Predicted Domain #1

Region A:
Residues: [1-720]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLKVAASL SVRSCFDIDR EVVNVLTTDF CDVGAAVVSV DDVKDGIVEK IKNTGLKLPI  60
   61 FVSVCCEETF PDDICSSITG VFELCGSNTD FYGKQVETAI KKYEQALLPP FFGTLKKYVE 120
  121 MGNSTFACPG HQGGQFFRKH PVGRQFFDFF GETIFRSDMC NADVKLGDLL IHEGAPLDAQ 180
  181 KYAAKVFNAD KTYFVLNGTS SSNKVATNAL LAKGDLVLFD RNNHKSNHHG ALIQAGATPI 240
  241 YLETARNPFG FIGGIDAHCF KEAYLREQIR EVAPERADEK RPFRLAIIQL GTYDGTIYNA 300
  301 RQVVDRIGHL CDYILFDSAW VGYEQFIPMM NDCSPLLLEL TPEDPGIIVT QSVHKQQAGF 360
  361 SQTSQIHKKD KHIKGQARYC NHKRFNNAFM MHASTSHFYP LFAALDVNAK MHEGASGRYL 420
  421 WREAVKAGIE ARKLLLKKCK YIKPFIPSMI DGRQWQDYPT EQMADDLRFF EFEPGQKWHS 480
  481 FEGYEKGQYF VDPCKFLLTT PGIDAETGKY TEFGIPATIL ANFLRENNII PEKCDLNSIL 540
  541 FLMTPAEDMA KMQHLVSQIS RFEKLVDEDA PLSEVLPNVY NANKARYKDY TIRQLCQEMH 600
  601 NLYVSHDVKQ LQKEMFRHAH FPTKVMDPQE ANLEFIRGNV ELVPLSQIEG RIAAEGALPY 660
  661 PPGVLCMVPG EIWGGAVQRY FLALEEGINL LPGFSPELQG VYLESTPDGK IQALGYVLNK 720
  721

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	156.0
Match:	1ordA
Description:	Ornithine decarboxylase N-terminal "wing" domain; Ornithine decarboxylase major domain; Ornithine decarboxylase C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
signal transducer activity	3.45291511249928	bayes_pls_golite062009
molecular transducer activity	3.45291511249928	bayes_pls_golite062009
two-component response regulator activity	2.99674972321354	bayes_pls_golite062009
catalytic activity	2.66922865456094	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.85532625717753	bayes_pls_golite062009
transaminase activity	1.83482013760414	bayes_pls_golite062009
transferase activity	0.93810038069762	bayes_pls_golite062009
carbon-carbon lyase activity	0.75522815127318	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	0.34204345956722	bayes_pls_golite062009
lyase activity	0.0414385380659299	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: