YRC Public Data Repository - Protein Structure Prediction

Protein:	AROK_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROK_SHEON.

Description	E-value	Query Range	Subject Range
AROK_VIBPA - Shikimate kinase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=aroK PE=3 SV=1 AROK_VIBPA - Shikimate kinase OS=Vibrio parahaemolyticus GN=aroK PE=3 SV=1 gi\|91227283, gi\|... - gi\|91227283\|ref\|ZP_01261708.1\| shikimate kinase I [Vibrio alginolyticus 12G01], gi\|91188677\|gb\|EAS74...	141.0	[0..1]	[170..1]
gi\|13363706, gi\|... - gi\|15833486\|ref\|NP_312259.1\| shikimate kinase I [Escherichia coli O157:H7 str. Sakai], gi\|13363706\|d... gi\|209756656, gi... - gi\|25288011\|pir\|\|F86003 shikimate kinase I [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|12518013, gi\|... - gi\|15803893\|ref\|NP_289929.1\| shikimate kinase I [Escherichia coli O157:H7 EDL933], gi\|12518013\|gb\|AA... gi\|13363706, gi\|... - gi\|15833486\|ref\|NP_312259.1\| shikimate kinase I [Escherichia coli O157:H7], gi\|13363706\|dbj\|BAB37655...	140.0	[0..1]	[170..68]
AROK_PSYWF - Shikimate kinase OS=Psychrobacter sp. (strain PRwf-1) GN=aroK PE=3 SV=1	140.0	[0..7]	[169..8]
AROK_VIBVU - Shikimate kinase OS=Vibrio vulnificus (strain CMCP6) GN=aroK PE=3 SV=1 AROK_VIBVY - Shikimate kinase OS=Vibrio vulnificus (strain YJ016) GN=aroK PE=3 SV=1 AROK_VIBVU - Shikimate kinase OS=Vibrio vulnificus GN=aroK PE=3 SV=1	140.0	[0..1]	[170..1]
gi\|237703117, gi... - gi\|237703117\|ref\|ZP_04533598.1\| shikimic acid kinase I [Escherichia sp. 3_2_53FAA], gi\|226902381\|gb\|... gi\|110616770, gi... - gi\|110807222\|ref\|YP_690742.1\| shikimate kinase I [Shigella flexneri 5 str. 8401], gi\|110616770\|gb\|AB... gi\|226839061, gi... - gi\|254038555\|ref\|ZP_04872611.1\| shikimate kinase I [Escherichia sp. 1_1_43], gi\|226839061\|gb\|EEH7108... gi\|91074436, gi\|... - gi\|91212862\|ref\|YP_542848.1\| shikimate kinase I [Escherichia coli UTI89], gi\|91074436\|gb\|ABE09317.1\|... gi\|7428049, gi\|6... - pir\|\|A65134 shikimate kinase (EC 2.7.1.71) I - Escherichia coli (strain K-12), gi\|606324\|gb\|AAA58187... gi\|56480324, gi\|... - gi\|56480324\|ref\|NP_709163.2\| shikimate kinase I [Shigella flexneri 2a str. 301], gi\|56383875\|gb\|AAN4... gi\|606324\|gb\|AAA... - shikimic acid kinase I [Escherichia coli] gi\|1789792, gi\|4... - gi\|49176344\|ref\|YP_026215.1\| shikimate kinase I [Escherichia coli K12], gb\|AAC76415.1\| shikimate kin... gi\|26249984, gi\|... - gi\|26249984\|ref\|NP_756024.1\| shikimate kinase I [Escherichia coli CFT073], gi\|26110413\|gb\|AAN82598.1... gi\|115514782, gi... - gi\|117625658\|ref\|YP_858981.1\| shikimate kinase I [Escherichia coli APEC O1], gi\|115514782\|gb\|ABJ0285... gi\|30043588, gi\|... - gi\|30065326\|ref\|NP_839497.1\| shikimate kinase I [Shigella flexneri 2a str. 2457T], gi\|30043588\|gb\|AA...	140.0	[0..1]	[170..68]
gi\|227839399, gi... - gi\|227883520\|ref\|ZP_04001325.1\| shikimate kinase I [Escherichia coli 83972], gi\|227839399\|gb\|EEJ4986... gi\|253322827, gi... - gi\|253771783\|ref\|YP_003034614.1\| Shikimate kinase [Escherichia coli BL21(DE3)], gi\|253322827\|gb\|ACT2... gi\|24053857, gi\|... - ref\|NP_709163.1\| shikimate kinase I [Shigella flexneri 2a str. 301], gb\|AAN44870.1\| shikimate kinas... gi\|110643623, gi... - gi\|110643623\|ref\|YP_671353.1\| shikimate kinase I [Escherichia coli 536], gi\|110345215\|gb\|ABG71452.1\|... gi\|124528164, gi... - gi\|124528164\|ref\|ZP_01699497.1\| Shikimate kinase [Escherichia coli B], gi\|124500819\|gb\|EAY48288.1\| S... gi\|170517741, gi... - gi\|170680023\|ref\|YP_001745633.1\| shikimate kinase [Escherichia coli SMS-3-5], gi\|170517741\|gb\|ACB159... gi\|191167874, gi... - gi\|191167874\|ref\|ZP_03029678.1\| shikimate kinase [Escherichia coli B7A], gi\|190902047\|gb\|EDV61792.1\|... gi\|190908103, gi... - gi\|191171476\|ref\|ZP_03033024.1\| shikimate kinase [Escherichia coli F11], gi\|190908103\|gb\|EDV67694.1\|... gi\|192932539, gi... - gi\|193061749\|ref\|ZP_03042846.1\| shikimate kinase [Escherichia coli E22], gi\|192932539\|gb\|EDV85136.1\|... gi\|193068837, gi... - gi\|193068837\|ref\|ZP_03049797.1\| shikimate kinase [Escherichia coli E110019], gi\|192957913\|gb\|EDV8835... gi\|194414936, gi... - gi\|194426975\|ref\|ZP_03059527.1\| shikimate kinase [Escherichia coli B171], gi\|194414936\|gb\|EDX31206.1... gi\|194431141, gi... - gi\|194431141\|ref\|ZP_03063434.1\| shikimate kinase [Shigella dysenteriae 1012], gi\|194420596\|gb\|EDX366... gi\|194421580, gi... - gi\|194439494\|ref\|ZP_03071569.1\| shikimate kinase [Escherichia coli 101-1], gi\|194421580\|gb\|EDX37592.... gi\|209914101, gi... - gi\|209920842\|ref\|YP_002294926.1\| shikimate kinase I [Escherichia coli SE11], gi\|209914101\|dbj\|BAG791...	140.0	[0..1]	[170..53]
AROK_RALSO - Shikimate kinase OS=Ralstonia solanacearum GN=aroK PE=3 SV=1 AROK_RALSO - Shikimate kinase OS=Ralstonia solanacearum (strain GMI1000) GN=aroK PE=3 SV=1	139.0	[0..2]	[170..1]
gi\|94312198, gi\|... - gi\|94312198\|ref\|YP_585408.1\| shikimate kinase [Ralstonia metallidurans CH34], gi\|93356050\|gb\|ABF1013...	139.0	[0..2]	[170..33]
AROK_HALHL - Shikimate kinase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=aroK PE=3 SV=1	139.0	[0..4]	[169..7]
AROK_ACTPJ - Shikimate kinase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=aroK PE=3 SV=1 gi\|32034445 - gi\|32034445\|ref\|ZP_00134627.1\| COG0703: Shikimate kinase [Actinobacillus pleuropneumoniae serovar 1 ... AROK_ACTP2 - Shikimate kinase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=aroK PE=3 SV=1	139.0	[0..1]	[169..1]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKRNIFLV GPMGAGKSTI GRHLAQMLHL EFHDSDQEIE QRTGADIAWV FDVEGEEGFR  60
   61 RREAQVIADL SEKQGIVLAT GGGSVQSKDI RNHLSARGIV VYLETTIDKQ VARTQRDKRR 120
  121 PLLQVDDPRE VLESLAEIRN PLYEEIADVV VKTDDQSAKV VANQIIEKLG F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1kagA
Description:	Shikimate kinase (AroK)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: