YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371859, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371859, gi|....

Description	E-value	Query Range	Subject Range
gi\|95111772 - gi\|95111772\|emb\|CAK16496.1\| cytochrome c-type biogenesis protein CcmC; heme ABC export system, perme... gi\|104782785, gi... - gi\|95111772\|emb\|CAK16496.1\| cytochrome c-type biogenesis protein CcmC; heme ABC export system, perme...	207.0	[0..2]	[242..5]
gi\|197316364, gi... - gi\|197334874\|ref\|YP_002156649.1\| heme chaperone heme-lyase [Vibrio fischeri MJ11], gi\|197316364\|gb\|A... gi\|59480530, gi\|... - gi\|59712429\|ref\|YP_205205.1\| heme exporter subunit C [Vibrio fischeri ES114], gi\|59480530\|gb\|AAW8631...	206.0	[0..1]	[245..1]
tr\|D7HAA7\|D7HAA7... - Heme exporter protein C OS=Vibrio cholerae RC385 GN=VCRC385_01384 PE=4 SV=1 gi\|194535415, gi... - gi\|75822834\|ref\|ZP_00752393.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi...	206.0	[0..1]	[243..1]
gi\|229348892, gi... - gi\|229513711\|ref\|ZP_04403173.1\| cytochrome c-type biogenesis protein CcmC [Vibrio cholerae TMA 21], ... gi\|229355360, gi... - gi\|229507855\|ref\|ZP_04397360.1\| cytochrome c-type biogenesis protein CcmC [Vibrio cholerae BX 330286... gi\|227082182, gi... - gi\|227082182\|ref\|YP_002810733.1\| heme exporter protein C [Vibrio cholerae M66-2], gi\|227010070\|gb\|AC... gi\|75829267, gi\|... - gi\|75829267\|ref\|ZP_00758576.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi... gi\|75827364, gi\|... - gi\|75827364\|ref\|ZP_00756799.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi... gi\|121727358, gi... - gi\|75814803\|ref\|ZP_00745351.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi... gi\|124119073, gi... - gi\|153222213\|ref\|ZP_01952992.1\| heme exporter protein C [Vibrio cholerae MAK 757], gi\|124119073\|gb\|E... gi\|148875602, gi... - gi\|153828896\|ref\|ZP_01981563.1\| heme exporter protein C [Vibrio cholerae 623-39], gi\|148875602\|gb\|ED... gi\|9656600, gi\|1... - gi\|9656600\|gb\|AAF95201.1\| heme exporter protein C [Vibrio cholerae O1 biovar El Tor str. N16961], gi... gi\|126509904, gi... - gi\|153819537\|ref\|ZP_01972204.1\| heme exporter protein C [Vibrio cholerae NCTC 8457], gi\|126509904\|gb... gi\|11277338 - pir\|\|A82125 heme exporter protein C VC2055 [imported] - Vibrio cholerae (strain N16961 serogroup O1... gi\|229511909, gi... - gi\|229511909\|ref\|ZP_04401388.1\| cytochrome c-type biogenesis protein CcmC [Vibrio cholerae B33], gi\|... gi\|229370055, gi... - gi\|229607400\|ref\|YP_002878048.1\| cytochrome c-type biogenesis protein CcmC [Vibrio cholerae MJ-1236]... gi\|229519045, gi... - gi\|229519045\|ref\|ZP_04408488.1\| cytochrome c-type biogenesis protein CcmC [Vibrio cholerae RC9], gi\|...	206.0	[0..1]	[243..1]
gi\|150963515, gi... - gi\|94415043\|ref\|ZP_01294892.1\| hypothetical protein PaerP_01003151 [Pseudomonas aeruginosa PA7], gi\|...	206.0	[0..2]	[245..4]
gi\|77457806, gi\|... - gi\|77457806\|ref\|YP_347311.1\| cytochrome c-type biogenesis protein CcmC [Pseudomonas fluorescens Pf0-...	205.0	[0..2]	[243..3]
gi\|23472660, gi\|... - gi\|66046620\|ref\|YP_236461.1\| cytochrome c-type biogenesis protein CcmC [Pseudomonas syringae pv. syr...	205.0	[0..2]	[243..12]
gi\|194536767, gi... - gi\|75818721\|ref\|ZP_00748850.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi... gi\|229522015, gi... - gi\|229522015\|ref\|ZP_04411432.1\| cytochrome c-type biogenesis protein CcmC [Vibrio cholerae TM 11079-... gi\|150423115, gi... - gi\|254286824\|ref\|ZP_04961777.1\| heme exporter protein C [Vibrio cholerae AM-19226], gi\|197751690\|ref... gi\|121586923, gi... - gi\|121586923\|ref\|ZP_01676703.1\| heme exporter protein C [Vibrio cholerae 2740-80], gi\|121548859\|gb\|E... gi\|149740217, gi... - gi\|153826100\|ref\|ZP_01978767.1\| heme exporter protein C [Vibrio cholerae MZO-2], gi\|149740217\|gb\|EDM... gi\|229528927, gi... - gi\|229528927\|ref\|ZP_04418317.1\| cytochrome c-type biogenesis protein CcmC [Vibrio cholerae 12129(1)]... gi\|229524063, gi... - gi\|229524063\|ref\|ZP_04413468.1\| cytochrome c-type biogenesis protein CcmC [Vibrio cholerae bv. alben... gi\|124115791, gi... - gi\|153213730\|ref\|ZP_01948982.1\| heme exporter protein C [Vibrio cholerae 1587], gi\|124115791\|gb\|EAY3...	205.0	[0..1]	[243..1]
gi\|68343371, gi\|... - gi\|70729072\|ref\|YP_258808.1\| heme exporter protein CcmC [Pseudomonas fluorescens Pf-5], gi\|68343371\|...	205.0	[0..2]	[243..3]
gi\|49082260 - gi\|49082260\|gb\|AAT50530.1\| PA1477 [synthetic construct]	203.0	[0..2]	[244..4]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKWLHPYAD PERAYKLSGT LFPWFAILAC LFITVGTVWG LLFAPTDYQQ GDSYRIIFIH  60
   61 VPAASMSMAA YMGMATAAFI GLVWQVKLAD WAAASIAPIG AVITFIALFT GATWGKPMWG 120
  121 TWWVWDARLT SELVLLFLYL GVISLYASFE DKVLAARAAG ILAIVGVINI PIIKYSVEWW 180
  181 SSLHQPSTIR ITEKSTMSSE MLYPLLINIL GFGLMIGAIT IVRFRAEILA RNGMRPWVRE 240
  241 LAKAEEVK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	57.552842
Match:	PF01578.11
Description:	No description for PF01578.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits