YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345590, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345590, gi|....

Description	E-value	Query Range	Subject Range
gi\|78506872, gi\|... - gi\|78685494\|ref\|ZP_00850272.1\| 3(2),5 -bisphosphate nucleotidase, bacterial [Shewanella sp. ANA-3], ...	271.0	[0..1]	[267..1]
gi\|82406200, gi\|... - gi\|82495895\|ref\|ZP_00881468.1\| 3(2),5 -bisphosphate nucleotidase, bacterial [Shewanella sp. MR-4], g...	271.0	[0..1]	[267..1]
gi\|113887120, gi... - gi\|78689157\|ref\|ZP_00853822.1\| 3(2),5 -bisphosphate nucleotidase, bacterial [Shewanella sp. MR-7], g...	271.0	[0..1]	[267..1]
gi\|113909613, gi... - gi\|160873298\|ref\|YP_001552614.1\| 3'(2'),5'-bisphosphate nucleotidase [Shewanella baltica OS195], gi\|...	267.0	[0..1]	[267..1]
gi\|126176372, gi... - gi\|68541285\|ref\|ZP_00581030.1\| 3(2),5 -bisphosphate nucleotidase, bacterial [Shewanella baltica OS15...	267.0	[0..1]	[267..1]
gi\|68545436, gi\|... - gi\|68545436\|ref\|ZP_00584987.1\| 3(2),5 -bisphosphate nucleotidase, bacterial [Shewanella amazonensis ...	266.0	[0..1]	[267..1]
gi\|77813383, gi\|... - gi\|77813383\|ref\|ZP_00812658.1\| 3(2),5 -bisphosphate nucleotidase, bacterial [Shewanella putrefaciens...	265.0	[0..1]	[267..1]
gi\|124548129, gi... - gi\|124548129\|ref\|ZP_01706895.1\| 3'(2'),5'-bisphosphate nucleotidase [Shewanella putrefaciens 200], g... gi\|120560567, gi... - gi\|82741843\|ref\|ZP_00904554.1\| 3(2),5 -bisphosphate nucleotidase, bacterial [Shewanella sp. W3-18-1]...	265.0	[0..1]	[267..1]
gi\|254851259, gi... - gi\|254851259\|ref\|ZP_05240609.1\| cysQ protein [Vibrio cholerae MO10], gi\|254846964\|gb\|EET25378.1\| cys... gi\|121726712, gi... - gi\|121726712\|ref\|ZP_01679937.1\| cysQ protein [Vibrio cholerae V52], gi\|121630873\|gb\|EAX63255.1\| cysQ... gi\|227082836, gi... - gi\|227082836\|ref\|YP_002811387.1\| cysQ protein [Vibrio cholerae M66-2], gi\|227010724\|gb\|ACP06936.1\| c... gi\|15642716, gi\|... - gi\|9657320\|gb\|AAF95862.1\| cysQ protein [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|15642716\|r... gi\|11354848 - pir\|\|D82040 cysQ protein VC2722 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|126521183, gi... - gi\|153821251\|ref\|ZP_01973918.1\| cysQ protein [Vibrio cholerae B33], gi\|126521183\|gb\|EAZ78406.1\| cysQ... gi\|227014608, gi... - gi\|227119158\|ref\|YP_002821054.1\| cysQ protein [Vibrio cholerae O395], gi\|227014608\|gb\|ACP10818.1\| cy...	262.0	[0..2]	[270..32]
gi\|114332599, gi... - gi\|69951910\|ref\|ZP_00639522.1\| 3(2),5 -bisphosphate nucleotidase, bacterial [Shewanella frigidimarin...	260.0	[0..1]	[267..1]

Back

Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPEELIDEV IAIATDAGRT IRDIYLKGNF ERETKSDNTP VTSADLAANK LICERLAALT  60
   61 PDIPILSEEA ADIPLSVREV WKCYWLVDPL DGTGEFIAGS GDFSVIVALV EHNRPVMGVV 120
  121 YVPMTQVCYY AIAGLGAYKR TDKQEVRISS RQIQHREQVS LRLAVSRRQD PQSVLTLFNQ 180
  181 PKHCELVVMG GAALKSCLVA EGRADCYVRV GPTGEWDTGA AQIIIEEAGG QMMDTELQPL 240
  241 TYNERETLEN PNFIVVGAPN LAWDKILIGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.045757
Match:	2qflA
Description:	No description for 2qflA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits