YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345518, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345518, gi|....

Description	E-value	Query Range	Subject Range
gi\|46319868, gi\|... - gi\|67545070\|ref\|ZP_00422995.1\| Protein of unknown function DUF333 [Burkholderia vietnamiensis G4], g...	116.0	[0..4]	[92..8]
gi\|194421424, gi... - gi\|83584977\|ref\|ZP_00923632.1\| COG3042: Putative hemolysin [Escherichia coli 101-1], gi\|194439603\|re... gi\|253977946, gi... - gi\|254288639\|ref\|YP_003054387.1\| conserved outer membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|251785240, gi... - gi\|251785240\|ref\|YP_002999544.1\| hypothetical protein B21_01750 [Escherichia coli BL21], gi\|24237751... gi\|81245220, gi\|... - gi\|82543809\|ref\|YP_407756.1\| hypothetical protein SBO_1300 [Shigella boydii Sb227], gi\|81245220\|gb\|A... gi\|253973752, gi... - gi\|254161851\|ref\|YP_003044959.1\| conserved outer membrane protein [Escherichia coli B str. REL606], ... gi\|75177282, gi\|... - gi\|75177282\|ref\|ZP_00697371.1\| COG3042: Putative hemolysin [Shigella boydii BS512], gi\|187731316\|ref... gi\|75513711, gi\|... - gi\|75513711\|ref\|ZP_00736087.1\| COG3042: Putative hemolysin [Escherichia coli 53638], gi\|188493617\|re...	113.0	[0..1]	[93..1]
gi\|172061242, gi... - gi\|172061242\|ref\|YP_001808894.1\| hypothetical protein BamMC406_2199 [Burkholderia ambifaria MC40-6],... gi\|115352372, gi... - gi\|115352372\|ref\|YP_774211.1\| hypothetical protein Bamb_2321 [Burkholderia ambifaria AMMD], gi\|11528...	113.0	[0..5]	[92..1]
YOAF_ECOLI - Hypothetical protein yoaF - Escherichia coli EG14304 - DUF333 family outer membrane lipoprotein / Novel verified lipoprotein, function unknown YOAF_ECOL6 - Uncharacterized protein yoaF OS=Escherichia coli O6 GN=yoaF PE=4 SV=1 gi\|170081449, gi... - gi\|170081449\|ref\|YP_001730769.1\| outer membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|209919155, gi... - gi\|209919155\|ref\|YP_002293239.1\| hypothetical protein ECSE_1964 [Escherichia coli SE11], gi\|20991241... gi\|218558660, gi... - gi\|218558660\|ref\|YP_002391573.1\| conserved hypothetical protein; putative outer membrane protein [Es... gi\|218427297, gi... - gi\|218689733\|ref\|YP_002397945.1\| conserved hypothetical protein; putative outer membrane protein [Es... gi\|75236742, gi\|... - gi\|75236742\|ref\|ZP_00720813.1\| COG3042: Putative hemolysin [Escherichia coli E110019], gi\|193068993\|... gi\|190900972, gi... - gi\|75227724\|ref\|ZP_00714456.1\| COG3042: Putative hemolysin [Escherichia coli B7A], gi\|191169008\|ref\|... gi\|157066935, gi... - gi\|75195859\|ref\|ZP_00705929.1\| COG3042: Putative hemolysin [Escherichia coli HS], gi\|157161255\|ref\|Y... gi\|238901007, gi... - gi\|238901007\|ref\|YP_002926803.1\| conserved outer membrane protein [Escherichia coli BW2952], gi\|2388... gi\|237705744, gi... - gi\|237705744\|ref\|ZP_04536225.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91211011, gi\|... - gi\|91211011\|ref\|YP_540997.1\| hypothetical protein UTI89_C1990 [Escherichia coli UTI89], gi\|91072585\|... gi\|227837352, gi... - gi\|227885779\|ref\|ZP_04003584.1\| hemolysin [Escherichia coli 83972], gi\|227837352\|gb\|EEJ47818.1\| hemo... gi\|110343506, gi... - gi\|110641914\|ref\|YP_669644.1\| hypothetical protein ECP_1740 [Escherichia coli 536], gi\|110343506\|gb\|... gi\|218699639, gi... - gi\|218699639\|ref\|YP_002407268.1\| conserved hypothetical protein; putative outer membrane protein [Es... YOAF_ECOL6 - Uncharacterized protein YoaF OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yoaF ... YOAF_SHIFL - Uncharacterized protein YoaF OS=Shigella flexneri GN=yoaF PE=4 SV=1 gi\|30062948, gi\|... - gi\|30062948\|ref\|NP_837119.1\| hypothetical protein S1546 [Shigella flexneri 2a str. 2457T], gi\|300411... gi\|85675124, gi\|... - gi\|89108632\|ref\|AP_002412.1\| conserved outer membrane protein [Escherichia coli str. K-12 substr. W3... gi\|24051747, gi\|... - gi\|24112814\|ref\|NP_707324.1\| hypothetical protein SF1431 [Shigella flexneri 2a str. 301], gi\|2405174... gi\|191171751, gi... - gi\|75241334\|ref\|ZP_00725185.1\| COG3042: Putative hemolysin [Escherichia coli F11], gi\|191171751\|ref\|... EG14304 - DUF333 family outer membrane lipoprotein / Novel verified lipoprotein, function unknown	113.0	[0..1]	[93..1]
gi\|78685454, gi\|... - gi\|78685454\|ref\|ZP_00850232.1\| hemolysin protein, putative [Shewanella sp. ANA-3], gi\|78506832\|gb\|EA...	112.0	[0..1]	[94..1]
gi\|28808395 - gi\|28808395\|dbj\|BAC61600.1\| hemolysin [Vibrio parahaemolyticus RIMD 2210633] gi\|149749667, gi... - gi\|153837079\|ref\|ZP_01989746.1\| hemolysin [Vibrio parahaemolyticus AQ3810], gi\|149749667\|gb\|EDM60412... gi\|28808395, gi\|... - gi\|28900112\|ref\|NP_799767.1\| hemolysin [Vibrio parahaemolyticus RIMD 2210633], gi\|28808395\|dbj\|BAC61...	111.0	[0..5]	[94..4]
gi\|81241102, gi\|... - gi\|82776954\|ref\|YP_403303.1\| hypothetical protein SDY_1691 [Shigella dysenteriae Sd197], gi\|81241102...	111.0	[0..1]	[93..1]
gi\|194433462, gi... - gi\|83569597\|ref\|ZP_00921048.1\| COG3042: Putative hemolysin [Shigella dysenteriae 1012], gi\|194433462...	110.0	[0..1]	[93..1]
gi\|75255312, gi\|... - gi\|75255312\|ref\|ZP_00727145.1\| COG3042: Putative hemolysin [Escherichia coli E22], gi\|193066589\|ref\|... gi\|75208200, gi\|... - gi\|75208200\|ref\|ZP_00708572.1\| COG3042: Putative hemolysin [Escherichia coli B171], gi\|194430493\|ref...	110.0	[0..1]	[93..1]
gi\|188016268, gi... - gi\|188016268\|gb\|EDU54390.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|16874937... gi\|187769371, gi... - gi\|187769371\|gb\|EDU33215.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|16877489... gi\|168770763, gi... - gi\|189360336\|gb\|EDU78755.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|16877076... gi\|189365709, gi... - gi\|189365709\|gb\|EDU84125.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|16876426... gi\|189355009, gi... - gi\|189355009\|gb\|EDU73428.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|16875810... gi\|15831756, gi\|... - gi\|15831756\|ref\|NP_310529.1\| hypothetical protein ECs2502 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|25496391, gi\|... - pir\|\|B85790 hypothetical protein yoaF [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12515830, gi\|... - gi\|15802207\|ref\|NP_288229.1\| hypothetical protein Z2835 [Escherichia coli O157:H7 EDL933], gi\|125158... gi\|15831756, gi\|... - gi\|15831756\|ref\|NP_310529.1\| hypothetical protein ECs2502 [Escherichia coli O157:H7], gi\|13361969\|db... gi\|217328677, gi... - gi\|217328677\|ref\|ZP_03444758.1\| putative lipoprotein [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|195937481 - gi\|195937481\|ref\|ZP_03082863.1\| hypothetical protein EscherichcoliO157_13697 [Escherichia coli O157:... gi\|189376752, gi... - gi\|189376752\|gb\|EDU95168.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|168801046... gi\|189371933, gi... - gi\|189371933\|gb\|EDU90349.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC869], gi\|168788203... gi\|189000253, gi... - gi\|189000253\|gb\|EDU69239.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|16878222... gi\|209398179, gi... - gi\|209398179\|ref\|YP_002270868.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|208741278, gi... - gi\|208821155\|ref\|ZP_03261475.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|208731144, gi... - gi\|208816801\|ref\|ZP_03257921.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208724936, gi... - gi\|208810420\|ref\|ZP_03252296.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|254592815, gi... - gi\|254793415\|ref\|YP_003078252.1\| conserved outer membrane protein [Escherichia coli O157:H7 str. TW1...	110.0	[0..1]	[93..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLASAWLFG LIICSGLAGC GEKTEPATNA QAETKTEAKT QIANPASEYC ASLGGTSEIQ  60
   61 RTAEGEHGMC TLPNGEQIEE WALFRRDHPH PQEQSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.187087
Match:	PF03891.6
Description:	No description for PF03891.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits