YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371612, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371612, gi|....

Description	E-value	Query Range	Subject Range
gi\|50748528 - gi\|50748528\|ref\|XP_421288.1\| PREDICTED: hypothetical protein isoform 3 [Gallus gallus]	174.0	[0..2]	[209..5]
gi\|50540032, gi\|... - gi\|50540032\|ref\|NP_001002481.1\| glutathione transferase zeta 1 isoform 2 [Danio rerio], gi\|49903077\|...	172.0	[0..2]	[209..10]
MAAI_RAT - Maleylacetoacetate isomerase OS=Rattus norvegicus GN=Gstz1 PE=1 SV=2	172.0	[0..2]	[209..5]
GSTZ1_ARATH - Glutathione S-transferase Z1 OS=Arabidopsis thaliana GN=GSTZ1 PE=1 SV=1	170.0	[0..2]	[209..8]
MAAI_MOUSE - Maleylacetoacetate isomerase OS=Mus musculus GN=Gstz1 PE=1 SV=1	170.0	[0..2]	[209..5]
gi\|109084410 - gi\|109084410\|ref\|XP_001101990.1\| PREDICTED: similar to glutathione transferase zeta 1 isoform 1 isof...	167.0	[0..2]	[209..5]
gi\|48095935 - gi\|48095935\|ref\|XP_394562.1\| PREDICTED: similar to CG9363-PB, isoform B [Apis mellifera]	167.0	[0..2]	[210..6]

Back

Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLYIGNKNY SSWSLRAWLM VKKSGIKFDE ILLQLDTDSF YQQLQSISPT LKVPTLVDGD  60
   61 ITVWDSLSIC EYINDSYLSG TAWPQDPKQK AKARSLACEM HSGFNALRNA LPMNIRARRY 120
  121 VELSPAVQQD IARVDSIWSQ QMAEFAPCQT QGTWLFGQWS IADMMFAPVV MRFFTYEIEV 180
  181 SQASRAYMEY IMSQPQMQAW ITAAKAETEI VEADEAGVDR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	2cz2A
Description:	Crystal structure of glutathione transferase zeta 1-1 (maleylacetoacetate isomerase) from Mus musculus (form-1 crystal)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits