YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345361, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	805 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345361, gi|....

Description	E-value	Query Range	Subject Range
gi\|90437642, gi\|... - gi\|90581121\|ref\|ZP_01236920.1\| DNA gyrase subunit B [Vibrio angustum S14], gi\|90437642\|gb\|EAS62834.1...	1111.0	[0..1]	[805..1]
gi\|116221138, gi... - gi\|75820509\|ref\|ZP_00750554.1\| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... tr\|A0A085RQ54\|A0... - DNA gyrase subunit B OS=Vibrio cholerae GN=gyrB PE=3 SV=1 gi\|254291124, gi... - gi\|254291124\|ref\|ZP_04961921.1\| DNA gyrase, subunit B [Vibrio cholerae AM-19226], gi\|197751544\|ref\|Y...	1111.0	[0..1]	[805..1]
gi\|68514168, gi\|... - gi\|68548112\|ref\|ZP_00587629.1\| DNA gyrase, B subunit [Shewanella amazonensis SB2B], gi\|68514168\|gb\|E...	1111.0	[0..1]	[805..1]
gi\|153223913, gi... - gi\|153223913\|ref\|ZP_01954129.1\| DNA gyrase, subunit B [Vibrio cholerae MAK 757], gi\|124117960\|gb\|EAY... gi\|153819850, gi... - gi\|153819850\|ref\|ZP_01972517.1\| DNA gyrase, subunit B [Vibrio cholerae NCTC 8457], gi\|126509611\|gb\|E... gi\|229508861, gi... - gi\|229508861\|ref\|ZP_04398352.1\| DNA gyrase subunit B [Vibrio cholerae B33], gi\|229354136\|gb\|EEO19068... GYRB_VIBCH - DNA gyrase subunit B OS=Vibrio cholerae GN=gyrB PE=3 SV=1 gi\|75829895, gi\|... - gi\|75829895\|ref\|ZP_00759184.1\| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... gi\|227008140, gi... - gi\|227080252\|ref\|YP_002808803.1\| DNA gyrase, subunit B [Vibrio cholerae M66-2], gi\|227008140\|gb\|ACP0... gi\|75828133, gi\|... - gi\|75828133\|ref\|ZP_00757568.1\| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... gi\|229508300, gi... - gi\|229508300\|ref\|ZP_04397804.1\| DNA gyrase subunit B [Vibrio cholerae BX 330286], gi\|229354573\|gb\|EE... gi\|121727887, gi... - gi\|75814471\|ref\|ZP_00745055.1\| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... gi\|229346195, gi... - gi\|229517132\|ref\|ZP_04406578.1\| DNA gyrase subunit B [Vibrio cholerae RC9], gi\|229346195\|gb\|EEO11167... gi\|229369229, gi... - gi\|229606574\|ref\|YP_002877222.1\| DNA gyrase subunit B [Vibrio cholerae MJ-1236], gi\|229369229\|gb\|ACQ... GYRB_VIBCH - DNA gyrase subunit B OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=gyr...	1110.0	[0..1]	[805..1]
gi\|89074699, gi\|... - gi\|89074699\|ref\|ZP_01161157.1\| DNA gyrase subunit B [Photobacterium sp. SKA34], gi\|89049463\|gb\|EAR55...	1110.0	[0..1]	[805..1]
gi\|27364430, gi\|... - gi\|27364430\|ref\|NP_759958.1\| DNA gyrase subunit B [Vibrio vulnificus CMCP6], gi\|27360549\|gb\|AAO09485... gi\|37678198, gi\|... - gi\|37678198\|ref\|NP_932807.1\| DNA gyrase subunit B [Vibrio vulnificus YJ016], gi\|37196937\|dbj\|BAC9277...	1109.0	[0..1]	[805..1]
gi\|82404240, gi\|... - gi\|82497730\|ref\|ZP_00883258.1\| DNA gyrase, B subunit [Shewanella sp. MR-4], gi\|82404240\|gb\|EAP44933....	1109.0	[0..1]	[805..1]
gi\|78690247, gi\|... - gi\|78690247\|ref\|ZP_00854897.1\| DNA gyrase, B subunit [Shewanella sp. MR-7], gi\|78510399\|gb\|EAP23771....	1109.0	[0..1]	[805..1]
gi\|26110870, gi\|... - gi\|26250440\|ref\|NP_756480.1\| DNA gyrase subunit B [Escherichia coli CFT073], gi\|26110870\|gb\|AAN83054... gi\|91213221, gi\|... - gi\|91213221\|ref\|YP_543207.1\| DNA gyrase subunit B [Escherichia coli UTI89], gi\|91074795\|gb\|ABE09676.... gi\|237703499, gi... - gi\|237703499\|ref\|ZP_04533980.1\| subunit B [Escherichia sp. 3_2_53FAA], gi\|226902763\|gb\|EEH89022.1\| s...	1104.0	[0..1]	[805..1]
gi\|78504652, gi\|... - gi\|78687578\|ref\|ZP_00852322.1\| DNA gyrase, B subunit [Shewanella sp. ANA-3], gi\|78504652\|gb\|EAP18201...	1103.0	[0..1]	[805..1]

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Predicted Domain #1

Region A:
Residues: [1-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENSYDSSS IKVLKGLDAV RKRPGMYIGD TDDGTGLHHM VFEVVDNSID EALAGHCTDI  60
   61 TITIHVDGSV SVKDDGRGIP VSIHEEEGVS AAEVIMTVLH AGGKFDDNSY KVSGGLHGVG 120
  121 VSVVNALSKK LQLTIRRDGK VHEQFYTHGV PDAPIKEIGD ATKTGTEIRF WPSEQTFSNV 180
  181 EFHFEILAKR VRELSFLNSG VGIRLVDERD NKNEFFKYEG GISAFVDYLN RNKTPVNKDV 240
  241 FHFMQERDDG ITVEVAMQWN DGYQENIFCF TNNIPQRDGG THLAGFRSAL TRNLNNYMEN 300
  301 EGYNKKGKTN ATGDDAREGL TAVISVKVPD PKFSSQTKDK LVSSEVKAAV EQTMGEKLND 360
  361 YLLENPADAK LIVGKIVDAA RAREAARKAR EMTRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	160.0
Match:	1ei1A
Description:	DNA gyrase B
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [396-731]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGALDLGGLP GKLADCQEKD PGLSEIYIVE GDSAGGSAKQ GRNRKNQAIL PLKGKILNVE  60
   61 KARFDKMLSS QEVATLITAL GCGIGRDEYN PDKTRYHNII IMTDADVDGS HIRTLLLTFF 120
  121 FRQMPELIER GYVYIAQPPL FKVKKGKQEQ YLKDESALTQ YLTTQALDGT SIYPSQGAPG 180
  181 MSGEPLERLV TQYREVEAIV ARLEQRYPTH ITNRMLYHPM ISNDMLADEA KMKEWIDAFI 240
  241 HELVELENSG VLYSGEPVLD PERKVYLPKI TIRKHGIDTH YLFSYDFFQS MDYQRIAKLG 300
  301 AALEGLIEVG GYVQRGDRVK EVGSFIEALD WTISEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.522879
Match:	1bgwA
Description:	TOPOISOMERASE RESIDUES 410-1202,
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [732-805]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRGLYIQRYK GLGEMNPEQL WETTMDPESR RMLQVTIDDA VGADQLFTCL MGDQVEPRRE  60
   61 FIEANALNVA NLDV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.94
Match:	1bgwA
Description:	TOPOISOMERASE RESIDUES 410-1202,
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits