YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24050378, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24050378, gi|....

Description	E-value	Query Range	Subject Range
gi\|110640394, gi... - gi\|110640394\|ref\|YP_668122.1\| CDP-diglyceride synthase [Escherichia coli 536], gi\|110341986\|gb\|ABG68... gi\|191172767, gi... - gi\|191172767\|ref\|ZP_03034304.1\| phosphatidate cytidylyltransferase [Escherichia coli F11], gi\|190906... gi\|91209245, gi\|... - gi\|91209245\|ref\|YP_539231.1\| CDP-diglyceride synthase [Escherichia coli UTI89], gi\|91070819\|gb\|ABE05... gi\|218363885, gi... - gi\|218557116\|ref\|YP_002390029.1\| CDP-diglyceride synthase [Escherichia coli S88], gi\|218363885\|emb\|C... gi\|237704334, gi... - gi\|237704334\|ref\|ZP_04534815.1\| phosphatidate cytidylyltransferase [Escherichia sp. 3_2_53FAA], gi\|2...	232.0	[0..1]	[285..1]
gi\|26246121, gi\|... - gi\|26246121\|ref\|NP_752160.1\| CDP-diglyceride synthase [Escherichia coli CFT073], gi\|26106518\|gb\|AAN7... gi\|218425614, gi... - gi\|218688050\|ref\|YP_002396262.1\| CDP-diglyceride synthase [Escherichia coli ED1a], gi\|218425614\|emb\|... gi\|170520306, gi... - gi\|170682588\|ref\|YP_001742303.1\| phosphatidate cytidylyltransferase [Escherichia coli SMS-3-5], gi\|1... gi\|227884912, gi... - gi\|227884912\|ref\|ZP_04002717.1\| phosphatidate cytidylyltransferase [Escherichia coli 83972], gi\|2278...	232.0	[0..1]	[285..1]
gi\|197361430, gi... - gi\|197361430\|ref\|YP_002141066.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serov... gi\|56126752, gi\|... - gi\|56412495\|ref\|YP_149570.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serovar P...	228.0	[0..1]	[285..1]
lcl\|NC_016856.1_... - [gene=cdsA] [protein=CDP-diglyceride synthase] [protein_id=YP_005235894.1] [location=260831..261688] gi\|16759212 - gi\|16759212\|ref\|NP_454829.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serovar T... gi\|16418727, gi\|... - gi\|16763612\|ref\|NP_459227.1\| CDP-diglyceride synthase [Salmonella typhimurium LT2], gi\|16418727\|gb\|A... gi\|29140762, gi\|... - gi\|29140762\|ref\|NP_804104.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serovar T... gi\|25288702, gi\|... - gi\|25288702\|pir\|\|AH0529 phosphatidate cytidylyltransferase [imported] - Salmonella enterica subsp. e... gi\|205336211, gi... - gi\|205336211\|gb\|EDZ22975.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|197292064, gi... - gi\|197292064\|gb\|EDY31414.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|205334954, gi... - gi\|205334954\|gb\|EDZ21718.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|205331391, gi... - gi\|205331391\|gb\|EDZ18155.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|194401897, gi... - gi\|194443234\|ref\|YP_002039462.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|205340479, gi... - gi\|205340479\|gb\|EDZ27243.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|168464214, gi... - gi\|195632976\|gb\|EDX51430.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|168263910, gi... - gi\|205347506\|gb\|EDZ34137.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|205322196, gi... - gi\|205322196\|gb\|EDZ10035.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enterica ... gi\|162139615 - gi\|162139615\|ref\|YP_215209.2\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serovar ... gi\|213609346 - gi\|213609346\|ref\|ZP_03369172.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|213425948 - gi\|213425948\|ref\|ZP_03358698.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|213163133 - gi\|213163133\|ref\|ZP_03348843.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|207855740, gi... - gi\|207855740\|ref\|YP_002242391.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serov... gi\|224582070, gi... - gi\|224582070\|ref\|YP_002635868.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|214000835 - gi\|214000835\|ref\|ZP_03411570.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|213646662 - gi\|213646662\|ref\|ZP_03376715.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serova... gi\|197249050, gi... - gi\|197249050\|ref\|YP_002145227.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|194710240, gi... - gi\|194734738\|ref\|YP_002113245.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|194457046, gi... - gi\|194470682\|ref\|ZP_03076666.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enter... gi\|194448982, gi... - gi\|194448982\|ref\|YP_002044212.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serov... gi\|205351559, gi... - gi\|205351559\|ref\|YP_002225360.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serov... gi\|204323390, gi... - gi\|204926725\|ref\|ZP_03217927.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enter... gi\|198242689, gi... - gi\|198242689\|ref\|YP_002214183.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. ente... gi\|197263977, gi... - gi\|197263977\|ref\|ZP_03164051.1\| phosphatidate cytidylyltransferase [Salmonella enterica subsp. enter...	228.0	[0..1]	[285..1]
gi\|186699443, gi... - gi\|186896417\|ref\|YP_001873529.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis PB1/+], gi\|18... gi\|51597312, gi\|... - gi\|51597312\|ref\|YP_071503.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis IP 32953], gi\|515... Q667J5\|Q667J5_YERPS - Phosphatidate cytidylyltransferase precursor - Yersinia pseudotuberculosis	227.0	[0..1]	[282..1]
gi\|108806523, gi... - gi\|108806523\|ref\|YP_650439.1\| CDP-diglyceride synthase [Yersinia pestis Antiqua], gi\|108778436\|gb\|AB... gi\|22127005, gi\|... - gi\|22127005\|ref\|NP_670428.1\| CDP-diglyceride synthase [Yersinia pestis KIM], gi\|21960051\|gb\|AAM86679... gi\|25288701 - pir\|\|AI0128 phosphatidate cytidylyltransferase (EC 2.7.7.41) [imported] - Yersinia pestis (strain CO... gi\|115346829, gi... - gi\|218928218\|ref\|YP_002346093.1\| CDP-diglyceride synthase [Yersinia pestis CO92], gi\|16121350\|ref\|NP... gi\|152961537, gi... - gi\|153950042\|ref\|YP_001400003.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis IP 31758], gi... gi\|45442568, gi\|... - gi\|45442568\|ref\|NP_994107.1\| CDP-diglyceride synthase [Yersinia pestis biovar Microtus str. 91001], ... gi\|108776758, gi... - gi\|229903553\|ref\|ZP_04518666.1\| CDP-diglyceride synthase [Yersinia pestis Nepal516], gi\|229679323\|gb... gi\|149290563, gi... - gi\|149366949\|ref\|ZP_01888982.1\| phosphatidate cytidylyltransferase [Yersinia pestis CA88-4125], gi\|1... gi\|169749855, gi... - gi\|170023321\|ref\|YP_001719826.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis YPIII], gi\|16... gi\|167470425 - gi\|167470425\|ref\|ZP_02335129.1\| phosphatidate cytidylyltransferase [Yersinia pestis FV-1] gi\|166011927, gi... - gi\|166011927\|ref\|ZP_02232825.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Antiqua s... gi\|165912260, gi... - gi\|165939857\|ref\|ZP_02228397.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Orientali... gi\|165920971, gi... - gi\|165927075\|ref\|ZP_02222907.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Orientali... gi\|229837757, gi... - gi\|229837757\|ref\|ZP_04457917.1\| CDP-diglyceride synthase [Yersinia pestis Pestoides A], gi\|229704134... gi\|162421094, gi... - gi\|162421094\|ref\|YP_001607766.1\| CDP-diglyceride synthase [Yersinia pestis Angola], gi\|162353909\|gb\|... gi\|167055822, gi... - gi\|167425422\|ref\|ZP_02317175.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Mediaeval... gi\|229689956, gi... - gi\|229843080\|ref\|ZP_04463230.1\| CDP-diglyceride synthase [Yersinia pestis biovar Orientalis str. Ind... gi\|167419870, gi... - gi\|167419870\|ref\|ZP_02311623.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Orientali... gi\|229697345, gi... - gi\|229840979\|ref\|ZP_04461138.1\| CDP-diglyceride synthase [Yersinia pestis biovar Orientalis str. PEX... gi\|167050665, gi... - gi\|167399957\|ref\|ZP_02305475.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Antiqua s... gi\|166211247, gi... - gi\|166211247\|ref\|ZP_02237282.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Antiqua s...	226.0	[0..1]	[282..1]
gi\|75210498 - gi\|75210498\|ref\|ZP_00710649.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli B171] gi\|75194385 - gi\|75194385\|ref\|ZP_00704455.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli HS] gi\|75189270 - gi\|75189270\|ref\|ZP_00702537.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli E24377A] gi\|75176480 - gi\|75176480\|ref\|ZP_00696617.1\| COG0575: CDP-diglyceride synthetase [Shigella boydii BS512] gi\|83585491 - gi\|83585491\|ref\|ZP_00924136.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli 101-1] gi\|110804227, gi... - gi\|110804227\|ref\|YP_687747.1\| CDP-diglyceride synthase [Shigella flexneri 5 str. 8401], gi\|110613775... gi\|75512187 - gi\|75512187\|ref\|ZP_00734759.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli 53638] gi\|75258834 - gi\|75258834\|ref\|ZP_00730224.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli E22] gi\|75238878 - gi\|75238878\|ref\|ZP_00722860.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli E110019]	221.0	[0..12]	[285..2]
gi\|75240236 - gi\|75240236\|ref\|ZP_00724183.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli F11] gi\|117622460, gi... - gi\|117622460\|ref\|YP_851373.1\| CDP-diglyceride synthase [Escherichia coli APEC O1], gi\|115511584\|gb\|A...	221.0	[0..12]	[285..2]
gi\|62178792, gi\|... - gi\|62178792\|ref\|YP_215209.1\| CDP-diglyceride synthase [Salmonella enterica subsp. enterica serovar C...	217.0	[0..12]	[285..2]
gi\|85059915, gi\|... - gi\|85059915\|ref\|YP_455617.1\| CDP-diglyceride synthase [Sodalis glossinidius str. 'morsitans'], gi\|84...	217.0	[0..1]	[285..1]

Back

Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYRLISAF VLIPVVIAAL FLLPPVGFAI VTLVVCMLAA WEWGQLSGFT TRSQRVWLAV  60
   61 LCGLLLALML FLLPEYHRNI HQPLVEISLW ASLGWWIVAL LLVLFYPGSA AIWR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSKTLRLIFG VLTIVPFFWG MLALRAWHYD ENHYSGAIWL LYVMILVWGA DSGAYMFGKL  60
   61 FGKHKLAPKV SPGKTWQGFI GGLATAAVIS WGYGMWANLD VAPVTLLICS IVAALASVLG 120
  121 DLTESMFKRE AGIKDSGHLI PGHGGILDRI DSLTAAVPVF ACLLLLVFRT L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits