YRC Public Data Repository - Protein Structure Prediction

Protein:	VA0E_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	73 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VA0E_YEAST.

Description	E-value	Query Range	Subject Range
gi\|151943816 - gi\|151943816\|gb\|EDN62116.1\| V-ATPase V0 sector subunit e [Saccharomyces cerevisiae YJM789] gi\|190406432 - gi\|190406432\|gb\|EDV09699.1\| vacuolar ATP synthase subunit e [Saccharomyces cerevisiae RM11-1a] VA0E_YEAST - V-type proton ATPase subunit e OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA9 PE=1... VMA9 - Vacuolar H+ ATPase subunit e of the V-ATPase V0 subcomplex; essential for vacuolar acidification; in...	5.0E-22	[1..73]	[1..73]
VA0E_ASHGO - V-type proton ATPase subunit e OS=Ashbya gossypii GN=VMA9 PE=3 SV=1 VA0E_ASHGO - V-type proton ATPase subunit e OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL...	7.0E-20	[3..73]	[2..72]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFYTVVGV FIVVSAMSVL FWIMAPKNNQ AVWRSTVILT LAMMFLMWAI TFLCQLHPLV  60
   61 APRRSDLRPE FAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits