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View Structure Prediction Details

Protein: RT21_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 177 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT21_YEAST.

Description E-value Query
Range
Subject
Range
gi|207347922 - gi|207347922|gb|EDZ73943.1| YBL090Wp-like protein [Saccharomyces cerevisiae AWRI1631]
MRP21 - Mitochondrial ribosomal protein of the small subunit; MRP21 exhibits genetic interactions with mutat...
RT21_YEAST - 37S ribosomal protein MRP21, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ...
gi|190408909 - gi|190408909|gb|EDV12174.1| mitochondrial ribosome small subunit component [Saccharomyces cerevisiae...
6.0E-78 [1..177] [1..177]
RT21_SCHPO - 37S ribosomal protein mrp21, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN...
mrp21 - mitochondrial ribosomal protein subunit Mrp21
2.0E-27 [103..177] [48..121]

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Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSTLRLSR ISLRRGFTTI DCLRQQNSDI DKIILNPIKL AQGSNSDRGQ TSKSKTDNAD  60
   61 ILSMEIPVDM MQSAGRINKR ELLSEAEIAR SSVENAQMRF NSGKSIIVNK NNPAESFKRL 120
  121 NRIMFENNIP GDKRSQRFYM KPGKVAELKR SQRHRKEFMM GFKRLIEIVK DAKRKGY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [101-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSGKSIIVNK NNPAESFKRL NRIMFENNIP GDKRSQRFYM KPGKVAELKR SQRHRKEFMM  60
   61 GFKRLIEIVK DAKRKGY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.54
Match: 1vs5U
Description: No description for 1vs5U was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle