YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RMD5_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 421 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMD5_YEAST.

Description E-value Query
Range
Subject
Range
gi|151942231 - gi|151942231|gb|EDN60587.1| protein required for maturation and assembly of cytochrome oxidase subun...
RMD5_YEAST - Sporulation protein RMD5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD5 PE=1 SV=1
gi|190404797 - gi|190404797|gb|EDV08064.1| sporulation protein RMD5 [Saccharomyces cerevisiae RM11-1a]
RMD5 - Conserved protein that has an E3-like ubiquitin ligase activity necessary for polyubiquitination and...
gi|207346542 - gi|207346542|gb|EDZ73014.1| YDR255Cp-like protein [Saccharomyces cerevisiae AWRI1631]
0.0 [1..421] [1..421]
gi|8099667, gi|1... - gi|8099667|gb|AAF72195.1|AF263247_1 erythroblast macrophage protein EMP [Mus musculus], gi|10946910|...
0.0 [8..417] [15..383]
gi|7022137 - gi|7022137|dbj|BAA91499.1| unnamed protein product [Homo sapiens]
0.0 [8..417] [26..394]
gi|66865920, gi|... - gi|79322754|ref|NP_001031397.1| protein binding / zinc ion binding [Arabidopsis thaliana], gi|668659...
2.0E-93 [53..418] [4..381]

Back

Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELLDSFET EFAKFYTDSN LEETNLQKCL DHTHEFKSQL KKLKAHLNKH IQESKPEVYN  60
   61 KLSDKEKQKF KR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRELIIEKLS KSQRQWDHSV KKQIKYVSQQ SNRFNKSTLN KLKEFDIDSV YVNKLPKETM  60
   61 ENVNEAIGYH ILRYSIDNMP LGNKNEAFQY LKDVYGITNK ESTEFIEMGQ IVHDLKKGDT 120
  121 ESCLKWCSNE MESLSSNHTA LSSLKFDLYT LSAMQIVKHG NPVELYYQIT QNAPLDCFRH 180
  181 REKELMQNVV PLLTKSLIGQ PIEDIDSK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [281-421]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNKELKECTS LFIKEYCAAK HIFFDSPLFL IVLSGLISFQ FFIKYKTIRE LAHVDWTTKD  60
   61 ELPFDVKLPD FLTHFHPIFI CPVLKEETTT ENPPYSLACH HIISKKALDR LSKNGTITFK 120
  121 CPYCPVNTSM SSTKKVRFVM L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.281 0.930 cytosol a.1.1 Globin-like

Predicted Domain #4
Region A:
Residues: [316-421]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LISFQFFIKY KTIRELAHVD WTTKDELPFD VKLPDFLTHF HPIFICPVLK EETTTENPPY  60
   61 SLACHHIISK KALDRLSKNG TITFKCPYCP VNTSMSSTKK VRFVML

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 2ct2A
Description: Solution Structure of the RING domain of the Tripartite motif protein 32
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle