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View Structure Prediction Details

Protein: NUP85_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 744 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP85_YEAST.

Description E-value Query
Range
Subject
Range
NUP85_YEAST - Nucleoporin NUP85 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP85 PE=1 SV=1
NUP85 - Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), required for assembly of the sub...
0.0 [1..744] [1..744]
NUP85_SCHPO - Nucleoporin nup85 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup85 PE=1 SV=1
nup85 - nucleoporin Nup85
0.0 [69..696] [36..643]
gi|50556854, gi|... - gi|50556854|ref|XP_505835.1| YALI0F24563p [Yarrowia lipolytica], gi|49651705|emb|CAG78646.1| YALI0F2...
gi|18076820, gi|... - gi|49651705|emb|CAG78646.1| YALI0F24563p [Yarrowia lipolytica], gi|18076820|emb|CAC86054.1| Nup85 pr...
0.0 [175..700] [163..647]
gi|17944889 - gi|17944889|gb|AAL48509.1| LD29726p [Drosophila melanogaster]
0.0 [137..691] [100..605]
npp-2 - status:Confirmed UniProt:Q22078 protein_id:CAB00054.1
0.0 [99..697] [3..559]
NUP85_ARATH - Nuclear pore complex protein NUP85 OS=Arabidopsis thaliana GN=NUP85 PE=1 SV=1
0.0 [180..674] [166..655]
gi|51036629, gi|... - gi|51036629|ref|NP_001002929.2| pericentrin 1 [Mus musculus], gi|12856972|dbj|BAB30848.1| unnamed pr...
0.0 [139..696] [100..605]
NUP85 - nucleoporin 85kDa
0.0 [135..696] [96..605]

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Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIDDSNRLL MDVDQFDFLD DGTAQLSNNK TDEEEQLYKR DPVSGAILVP MTVNDQPIEK  60
   61 NGDKMPLKFK LGPLSYQNMA FITAKDKYKL YPVRIPRLDT SKEFSAYVSG LFEIYRDLGD 120
  121 DRVFNVPTIG VVNS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [135-678]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFAKEHNATV NLAMEAILNE LEVFIGRVKD QDGRVNRFYE LEESLTVLNC LRTMYFILDG  60
   61 QDVEENRSEF IESLLNWINR SDGEPDEEYI EQVFSVKDST AGKKVFETQY FWKLLNQLVL 120
  121 RGLLSQAIGC IERSDLLPYL SDTCAVSFDA VSDSIELLKQ YPKDSSSTFR EWKNLVLKLS 180
  181 QAFGSSATDI SGELRDYIED FLLVIGGNQR KILQYSRTWY ESFCGFLLYY IPSLELSAEY 240
  241 LQMSLEANVV DITNDWEQPC VDIISGKIHS ILPVMESLDS CTAAFTAMIC EAKGLIENIF 300
  301 EGEKNSDDYS NEDNEMLEDL FSYRNGMASY MLNSFAFELC SLGDKELWPV AIGLIALSAT 360
  361 GTRSAKKMVI AELLPHYPFV TNDDIEWMLS ICVEWRLPEI AKEIYTTLGN QMLSAHNIIE 420
  421 SIANFSRAGK YELVKSYSWL LFEASCMEGQ KLDDPVLNAI VSKNSPAEDD VIIPQDILDC 480
  481 VVTNSMRQTL APYAVLSQFY ELRDREDWGQ ALRLLLLLIE FPYLPKHYLV LLVAKFLYPI 540
  541 FLLD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [679-744]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKKLMDEDSV ATVIEVIETK WDDADEKSSN LYETIIEADK SLPSSMATLL KNLRKKLNFK  60
   61 LCQAFM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle