YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20808898
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20808898.

Description	E-value	Query Range	Subject Range
gi\|242258165, gi... - gi\|242258165\|ref\|ZP_04802994.1\| conserved hypothetical protein [Thermoanaerobacter sp. X513], gi\|242... gi\|241903622, gi... - gi\|241903622\|ref\|ZP_04788343.1\| conserved hypothetical protein [Thermoanaerobacter brockii subsp. fi... gi\|166853508, gi... - gi\|167039268\|ref\|YP_001662253.1\| hypothetical protein Teth514_0609 [Thermoanaerobacter sp. X514], gi... gi\|76588449, gi\|... - gi\|76796179\|ref\|ZP_00778546.1\| Small acid-soluble spore protein, alpha/beta type [Thermoanaerobacter...	104.0	[0..1]	[65..1]
gi\|221312176 - gi\|221312176\|ref\|ZP_03593981.1\| small acid-soluble spore protein (alpha/beta-type SASP) [Bacillus su... gi\|221317109 - gi\|221317109\|ref\|ZP_03598403.1\| small acid-soluble spore protein (alpha/beta-type SASP) [Bacillus su... SSPF_BACSU - Protein sspF OS=Bacillus subtilis GN=sspF PE=3 SV=1 gi\|221321372 - gi\|221321372\|ref\|ZP_03602666.1\| small acid-soluble spore protein (alpha/beta-type SASP) [Bacillus su... SSPF_BACSU - Protein SspF OS=Bacillus subtilis (strain 168) GN=sspF PE=3 SV=1	99.0	[0..1]	[60..1]
gi\|52783902, gi\|... - gi\|52783902\|ref\|YP_089731.1\| SspF [Bacillus licheniformis ATCC 14580], gi\|52346404\|gb\|AAU39038.1\| Ss...	97.0	[0..1]	[60..1]
gi\|25494714 - pir\|\|D83657 small acid-soluble spore protein (minor alpha/beta-type SASP) sspF [imported] - Bacillus... gi\|15612623, gi\|... - gi\|15612623\|ref\|NP_240926.1\| small acid-soluble spore protein (minor alpha/beta-type SASP) [Bacillus...	96.0	[0..1]	[60..1]
gi\|83589658, gi\|... - gi\|83589658\|ref\|YP_429667.1\| small acid-soluble spore protein alpha/beta family protein [Moorella th...	95.0	[0..1]	[59..3]
gi\|56908089, gi\|... - gi\|56961855\|ref\|YP_173577.1\| small acid-soluble spore protein [Bacillus clausii KSM-K16], gi\|5690808...	93.0	[0..1]	[58..1]
gi\|89154883, gi\|... - gi\|89207203\|ref\|ZP_01185749.1\| Small acid-soluble spore protein, alpha/beta type [Bacillus weihenste... SSPF_BACCR - Protein SspF OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / N... gi\|218541757, gi... - gi\|218895180\|ref\|YP_002443591.1\| small, acid-soluble spore protein [Bacillus cereus G9842], gi\|21854... gi\|218161218, gi... - gi\|218233261\|ref\|YP_002364894.1\| small, acid-soluble spore protein [Bacillus cereus B4264], gi\|21816... gi\|74492897, gi\|... - gi\|75759606\|ref\|ZP_00739692.1\| SspF protein [Bacillus thuringiensis serovar israelensis ATCC 35646],... SSPF_BACCE - Protein SspF OS=Bacillus cereus GN=sspF PE=3 SV=1	92.0	[0..1]	[56..1]
gi\|50082968, gi\|... - gi\|50196906\|ref\|YP_016646.2\| small, acid-soluble spore protein [Bacillus anthracis str. 'Ames Ancest... gi\|218535063, gi... - gi\|218901245\|ref\|YP_002449079.1\| small, acid-soluble spore protein [Bacillus cereus AH820], gi\|21853... gi\|42779123, gi\|... - gi\|42779123\|ref\|NP_976370.1\| small, acid-soluble spore protein [Bacillus cereus ATCC 10987], gi\|4273... gi\|222093814, gi... - gi\|222093814\|ref\|YP_002527863.1\| small, acid-soluble spore protein [Bacillus cereus Q1], gi\|22123786... gi\|30253555, gi\|... - gi\|30260234\|ref\|NP_842611.1\| small, acid-soluble spore protein [Bacillus anthracis str. Ames], gi\|30... gi\|196047367, gi... - gi\|196047367\|ref\|ZP_03114580.1\| small, acid-soluble spore protein [Bacillus cereus 03BB108], gi\|1960... gi\|21398007 - ref\|NP_653992.1\| SASP, Small, acid-soluble spore proteins, alpha/beta type [Bacillus anthracis str. ... gi\|217065320, gi... - gi\|217957620\|ref\|YP_002336162.1\| small, acid-soluble spore protein [Bacillus cereus AH187], gi\|21706... gi\|196036367, gi... - gi\|196036367\|ref\|ZP_03103764.1\| small, acid-soluble spore protein [Bacillus cereus W], gi\|195990997\|... gi\|227812717, gi... - gi\|227812717\|ref\|YP_002812726.1\| small, acid-soluble spore protein [Bacillus anthracis str. CDC 684]... gi\|196027384, gi... - gi\|196041764\|ref\|ZP_03109054.1\| small, acid-soluble spore protein [Bacillus cereus NVH0597-99], gi\|1... gi\|229603962, gi... - gi\|229603962\|ref\|YP_002864695.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0248], ... gi\|172080179, gi... - gi\|177655338\|ref\|ZP_02936867.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0174], g... gi\|49177005, gi\|... - gi\|49183078\|ref\|YP_026330.1\| small, acid-soluble spore protein [Bacillus anthracis str. Sterne], gi\|... gi\|190559874, gi... - gi\|190568950\|ref\|ZP_03021851.1\| small, acid-soluble spore protein [Bacillus anthracis Tsiankovskii-I... gi\|225862096, gi... - gi\|225862096\|ref\|YP_002747474.1\| small, acid-soluble spore protein [Bacillus cereus 03BB102], gi\|225... gi\|170667106, gi... - gi\|170688882\|ref\|ZP_02880084.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0465], g... gi\|254733605, gi... - gi\|254733605\|ref\|ZP_05191324.1\| small, acid-soluble spore protein [Bacillus anthracis str. Western N... gi\|170707596, gi... - gi\|170707596\|ref\|ZP_02898049.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0389], g... gi\|254744652 - gi\|254744652\|ref\|ZP_05202331.1\| small, acid-soluble spore protein [Bacillus anthracis str. Kruger B] gi\|167529593, gi... - gi\|167635119\|ref\|ZP_02393436.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0442], g... gi\|254682329 - gi\|254682329\|ref\|ZP_05146190.1\| small, acid-soluble spore protein [Bacillus anthracis str. CNEVA-906... gi\|167510521, gi... - gi\|167641536\|ref\|ZP_02399784.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0193], g... gi\|254724185 - gi\|254724185\|ref\|ZP_05185970.1\| small, acid-soluble spore protein [Bacillus anthracis str. A1055] gi\|164711701, gi... - gi\|165872573\|ref\|ZP_02217205.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0488], g... gi\|254756357 - gi\|254756357\|ref\|ZP_05208386.1\| small, acid-soluble spore protein [Bacillus anthracis str. Vollum] gi\|254762413 - gi\|254762413\|ref\|ZP_05214255.1\| small, acid-soluble spore protein [Bacillus anthracis str. Australia...	92.0	[0..1]	[56..1]
gi\|89202236, gi\|... - gi\|89202236\|ref\|ZP_01180964.1\| Small acid-soluble spore protein, alpha/beta type [Bacillus cereus su...	91.0	[0..1]	[56..1]
SSPF_BACMQ - Protein SspF OS=Bacillus megaterium (strain ATCC 12872 / QMB1551) GN=sspF PE=3 SV=1 SSPF_BACME - Protein sspF OS=Bacillus megaterium GN=sspF PE=3 SV=1	90.0	[0..1]	[56..1]

Back

Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRRGLMSD QLKYELAKEL GVYDTVMREG WGSVTSRDCG NLVKLAIQRA EKMLVENYNN  60
   61 GKVTL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits