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View Structure Prediction Details

Protein: SUV3M_ARATH
Organism: Arabidopsis thaliana
Length: 571 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUV3M_ARATH.

Description E-value Query
Range
Subject
Range
gi|110739278 - gi|110739278|dbj|BAF01552.1| RNA helicase like protein [Arabidopsis thaliana]
339.0 [0..1] [571..1]

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Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYSVVRLRK VSALGISRVL QADKGSLWRF HFEPEFGDLL RLGVLTRNYR KNSGSPKFDF  60
   61 TGTGTTSKFD FTDLT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.0
Match: 1gm5A
Description: RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [76-571]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CPHTWYPIAR KKKRKVILHV GPTNSGKTYS ALKHLEQSSS GVYCGPLRLL AWEVAKRLNK  60
   61 ANVPCDLITG QEKDLVEGAT HKAVTVEMAD VTSVYDCAII DEIQMVGCKQ RGFAFTRALL 120
  121 GIAADELHLC GDPAVVPLVE DILKVTGDDV EVHTYERLSP LVPLKVPVSS VSSIKTGDCL 180
  181 VTFSRKDIYA YKKTIERAGK HLCSVVYGSL PPETRTAQAT RFNDETNDFD VLVASDAIGM 240
  241 GLNLNISRII FSTLQKYDGS ETRDLTVSEI KQIAGRAGRF QSKFPIGEVT CLHKEDLPLL 300
  301 HSSLKSPSPI LERAGLFPTF DLLSGYSQAH PTHGLYQILE HFVENAKLSS NYFISNVEDM 360
  361 MKVAAIVDEL PLGLQEKYLF VVSPVDVNDE ISGQGLAQFA QNFSKAGIVR LREILAPDRV 420
  421 KVPKTPTELK ELESIHKVLD LYVWLSLRLE DSFPDREVAA SQKSICNLLI EQFLEGNRLN 480
  481 SPARFSRYLR RQKLSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.045757
Match: 1oywA
Description: Structure of the RecQ Catalytic Core
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.470983068319171 bayes_pls_golite062009
hydrolase activity 0.0582794297634999 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle