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View Structure Prediction Details

Protein: gi|31711878, gi|...
Organism: Arabidopsis thaliana
Length: 393 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|31711878, gi|....

Description E-value Query
Range
Subject
Range
gi|27370958 - gi|27370958|gb|AAH40127.1| PRPF38B protein [Homo sapiens]
245.0 [0..4] [193..49]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEIQSNGRA YESLLEKVLS MNILSSDYFK ELYGLKTYHE VIDEIYNQVN HVEPWMGGNC  60
   61 RGPSTAYCLL YKFFTMKLTV KQMHGLLKHT DSPYIRAVGF LYLRYVADAK TLWTWYEPYI 120
  121 KDDEEFSPGS NGRMTTMGVY VRDLLLGLYY FDTLFPRIPV PVMRQIVSNL EKMNLPTKPS 180
  181 GSTGDMTRGS EDTAR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 30.920819
Match: PF03371.6
Description: No description for PF03371.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [196-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPPSVKASLS VSFGQRAPHR ASTRGSSPVR RPPPTGYDRN GGDEVQQRSP RRSQSRDYYS  60
   61 DRDSDRQRER E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [267-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REKDRERERG RDRYRERERD YGNDRRSRRD YDSRSRRNDY EDDRSRHDRR SRSRSRSRSR  60
   61 SVQIEREPTP KRDSSNKEKS AVTVNSNLAK LKDLYGDASS QKRDEGFGTR KDSSSEEVIK 120
  121 LGGSSWR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle