YRC Public Data Repository - Protein Structure Prediction

Protein:	PFDB_PYRAE
Organism:	Pyrobaculum aerophilum str. IM2
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PFDB_PYRAE.

Description	E-value	Query Range	Subject Range
gi\|89348180 - gi\|89348180\|gb\|ABD72216.1\| CTTNBP2 [Homo sapiens]	92.0	[0..2]	[116..133]
CTTB2_NEONE - Cortactin-binding protein 2 OS=Neofelis nebulosa GN=CTTNBP2 PE=3 SV=1	92.0	[0..2]	[116..133]
CTTB2_CHLAE - Cortactin-binding protein 2 OS=Chlorocebus aethiops GN=CTTNBP2 PE=3 SV=1	91.0	[0..2]	[116..133]
gi\|62901934 - gi\|62901934\|gb\|AAY18918.1\| prefoldin subunit 2 [synthetic construct]	91.0	[0..9]	[126..48]
CTTB2_GORGO - Cortactin-binding protein 2 OS=Gorilla gorilla gorilla GN=CTTNBP2 PE=3 SV=1	90.0	[0..2]	[116..133]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIPPSLQD LVNRFNQAQA QLQNVLLRKQ QYEAELKEVE KAISEIERLP QDAKIFKNVG  60
   61 NFLVPQSRDV ALQELRDRKE LLELHVKTLT RQESMLREQL DKLREEINKE LAKLKGGATE 120
  121 AAKGGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.0
Match:	1fxkB
Description:	Prefoldin beta subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits