YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25525276
Organism:	Brucella melitensis
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25525276.

Description	E-value	Query Range	Subject Range
gi\|254702588 - gi\|254702588\|ref\|ZP_05164416.1\| hypothetical protein Bsuib36_01277 [Brucella suis bv. 3 str. 686] gi\|254699466 - gi\|254699466\|ref\|ZP_05161294.1\| hypothetical protein Bsuib55_01184 [Brucella suis bv. 5 str. 513] gi\|23463506, gi\|... - gi\|23499929\|ref\|NP_699369.1\| hypothetical protein BRA0167 [Brucella suis 1330], gi\|23463506\|gb\|AAN33... gi\|254711426 - gi\|254711426\|ref\|ZP_05173237.1\| hypothetical protein BpinB_14457 [Brucella pinnipedialis B2/94] gi\|254706280 - gi\|254706280\|ref\|ZP_05168108.1\| hypothetical protein BpinM_04625 [Brucella pinnipedialis M163/99/10] gi\|254715095 - gi\|254715095\|ref\|ZP_05176906.1\| hypothetical protein BcetM_01267 [Brucella ceti M13/05/1] gi\|254712026 - gi\|254712026\|ref\|ZP_05173837.1\| hypothetical protein BcetM6_01262 [Brucella ceti M644/93/1] gi\|254731844 - gi\|254731844\|ref\|ZP_05190422.1\| hypothetical protein Babob42_11812 [Brucella abortus bv. 4 str. 292] gi\|254719844 - gi\|254719844\|ref\|ZP_05181655.1\| hypothetical protein Bru83_09915 [Brucella sp. 83/13] gi\|83269105 - gi\|83269105\|ref\|YP_418396.1\| hypothetical protein BAB2_0163 [Brucella melitensis biovar Abortus 2308... gi\|62317114, gi\|... - gi\|62317114\|ref\|YP_222967.1\| hypothetical protein BruAb2_0162 [Brucella abortus bv. 1 str. 9-941], g... gi\|82939379 - gi\|82939379\|emb\|CAJ12329.1\| conserved hypothetical protein [Brucella melitensis biovar Abortus 2308] gi\|148369561, gi... - gi\|148558276\|ref\|YP_001257222.1\| hypothetical protein BOV_A0148 [Brucella ovis ATCC 25840], gi\|14836... gi\|225686024, gi... - gi\|225686024\|ref\|YP_002733996.1\| hypothetical protein BMEA_B0168 [Brucella melitensis ATCC 23457], g... gi\|225616483, gi... - gi\|225628637\|ref\|ZP_03786671.1\| Hypothetical protein, conserved [Brucella ceti str. Cudo], gi\|225616... gi\|189022379, gi... - gi\|189022379\|ref\|YP_001932120.1\| hypothetical protein BAbS19_II01550 [Brucella abortus S19], gi\|1890... gi\|254691400 - gi\|254691400\|ref\|ZP_05154654.1\| hypothetical protein Babob68_14880 [Brucella abortus bv. 6 str. 870] gi\|163844357, gi... - gi\|163844357\|ref\|YP_001622012.1\| hypothetical protein BSUIS_B0170 [Brucella suis ATCC 23445], gi\|163... gi\|237816676, gi... - gi\|237816676\|ref\|ZP_04595668.1\| Hypothetical protein, conserved [Brucella abortus str. 2308 A], gi\|2... gi\|161620248, gi... - gi\|161620248\|ref\|YP_001594134.1\| hypothetical protein BCAN_B0167 [Brucella canis ATCC 23365], gi\|161... gi\|254698397 - gi\|254698397\|ref\|ZP_05160225.1\| hypothetical protein Babob28_11992 [Brucella abortus bv. 2 str. 86/8... gi\|254695302 - gi\|254695302\|ref\|ZP_05157130.1\| hypothetical protein Babob3T_11778 [Brucella abortus bv. 3 str. Tuly...	394.0	[0..1]	[276..3]
gi\|72120710, gi\|... - gi\|73537373\|ref\|YP_297740.1\| hypothetical protein Reut_B3538 [Ralstonia eutropha JMP134], gi\|7212071...	372.0	[0..3]	[274..7]
gi\|27382358, gi\|... - gi\|27382358\|ref\|NP_773887.1\| putative cytoplasmic protein [Bradyrhizobium japonicum USDA 110], gi\|27...	370.0	[0..1]	[276..5]
RPA1610 - RPA1610 conserved unknown protein 1790211:1791068 reverse MW:30858	370.0	[0..1]	[276..5]
gi\|86751045, gi\|... - gi\|86751045\|ref\|YP_487541.1\| hypothetical protein RPB_3937 [Rhodopseudomonas palustris HaA2], gi\|865...	369.0	[0..1]	[276..5]
gi\|91777550, gi\|... - gi\|91777550\|ref\|YP_552758.1\| hypothetical protein Bxe_B2585 [Burkholderia xenovorans LB400], gi\|9169...	367.0	[0..4]	[274..6]
gi\|91978160, gi\|... - gi\|91978160\|ref\|YP_570819.1\| hypothetical protein RPD_3697 [Rhodopseudomonas palustris BisB5], gi\|91...	366.0	[0..1]	[276..11]
gi\|46315875, gi\|... - gi\|78060833\|ref\|YP_367408.1\| hypothetical protein Bcep18194_C7720 [Burkholderia sp. 383], gi\|7796538...	365.0	[0..4]	[275..12]
gi\|134137228, gi... - gi\|67545946\|ref\|ZP_00423864.1\| conserved hypothetical protein [Burkholderia vietnamiensis G4], gi\|67...	365.0	[0..1]	[276..4]
gi\|93356677, gi\|... - gi\|94312825\|ref\|YP_586034.1\| hypothetical protein Rmet_3897 [Ralstonia metallidurans CH34], gi\|93356... gi\|222872792, gi... - gi\|224163456\|ref\|XP_002338561.1\| predicted protein [Populus trichocarpa], gi\|222872792\|gb\|EEF09923.1...	363.0	[0..2]	[274..5]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIEQLRSWI GREETRHELV TPSLVERFNA TFDHEGDTAN DAVAPLLIHL CLTQPAALTS  60
   61 RLGPDGHPAR GGFLPPVPLP RRMWAGGAFT FRDDIRVGDI VTRTSRIQDV VVKEGRTGTL 120
  121 CFVTVGHEFH SNGRHAVTER QDIVYRGADM SNPAAKTQPA VPHGPHCRFI TPSAPLLFRY 180
  181 SALTFNGHRI HYDAPYVRNV ENYPGLIVHG PMQATMLVRF ATEIRGKPPV RFDFRSLSPL 240
  241 FDDADFTLNA IDDGEGLKLW TSYANGPVAM EARALW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	7.83
Match:	1s9cA
Description:	Crystal structure analysis of the 2-enoyl-CoA hydratase 2 domain of human peroxisomal multifunctional enzyme type 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits