YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16804202
Organism:	Listeria monocytogenes EGD-e
Length:	358 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16804202.

Description	E-value	Query Range	Subject Range
gi\|254878222 - gi\|254878222\|ref\|ZP_05250932.1\| oxidoreductase [Listeria monocytogenes FSL J2-071] gi\|254853289 - gi\|254853289\|ref\|ZP_05242637.1\| oxidoreductase [Listeria monocytogenes FSL R2-503] gi\|46881667, gi\|... - gi\|46908396\|ref\|YP_014785.1\| Gfo/Idh/MocA family oxidoreductase [Listeria monocytogenes str. 4b F236... gi\|255521578 - gi\|255521578\|ref\|ZP_05388815.1\| oxidoreductase [Listeria monocytogenes FSL J1-175] gi\|133726482, gi... - gi\|153168056\|ref\|ZP_01928087.1\| hypothetical protein LMHG_00726 [Listeria monocytogenes FSL N1-017],... gi\|153203263, gi... - gi\|254931725\|ref\|ZP_05265084.1\| oxidoreductase [Listeria monocytogenes HPB2262], gi\|153203263\|ref\|ZP... gi\|47091832, gi\|... - gi\|47091832\|ref\|ZP_00229627.1\| oxidoreductase, Gfo/Idh/MocA family [Listeria monocytogenes str. 4b H... gi\|254825274 - gi\|254825274\|ref\|ZP_05230275.1\| oxidoreductase [Listeria monocytogenes FSL J1-194] gi\|226224770, gi... - gi\|226224770\|ref\|YP_002758877.1\| oxidoreductase [Listeria monocytogenes Clip81459], gi\|225877232\|emb...	279.0	[0..1]	[358..1]
gi\|25516449, gi\|... - pir\|\|AF1715 oxidoreductase homolog lin2266 [imported] - Listeria innocua (strain Clip11262), gi\|1641... gi\|16801330 - gi\|16801330\|ref\|NP_471598.1\| hypothetical protein lin2266 [Listeria innocua Clip11262]	277.0	[0..1]	[358..1]
gi\|76796791, gi\|... - gi\|76796791\|ref\|ZP_00779144.1\| Oxidoreductase, N-terminal:Oxidoreductase, C-terminal [Thermoanaeroba... gi\|241884318, gi... - gi\|241903252\|ref\|ZP_04787978.1\| oxidoreductase domain protein [Thermoanaerobacter brockii subsp. fin...	275.0	[0..2]	[358..5]
gi\|167039723, gi... - gi\|167039723\|ref\|YP_001662708.1\| oxidoreductase domain-containing protein [Thermoanaerobacter sp. X5... gi\|242256503, gi... - gi\|242256503\|ref\|ZP_04801393.1\| oxidoreductase domain protein [Thermoanaerobacter sp. X513], gi\|2422...	274.0	[0..2]	[358..5]
gi\|254912723 - gi\|254912723\|ref\|ZP_05262735.1\| oxidoreductase, Gfo/Idh/MocA family protein [Listeria monocytogenes ... gi\|47015880, gi\|... - gi\|47095737\|ref\|ZP_00233343.1\| oxidoreductase, Gfo/Idh/MocA family [Listeria monocytogenes str. 1/2a... gi\|254899136, gi... - gi\|254899136\|ref\|ZP_05259060.1\| oxidoreductase, Gfo/Idh/MocA family protein [Listeria monocytogenes ... gi\|153180183, gi... - gi\|254937050\|ref\|ZP_05268747.1\| oxidoreductase, Gfo/Idh/MocA family protein [Listeria monocytogenes ...	274.0	[0..1]	[358..1]
gi\|20808355, gi\|... - gi\|20808355\|ref\|NP_623526.1\| dehydrogenase and related proteins [Thermoanaerobacter tengcongensis MB... gi\|20808355 - gi\|20808355\|ref\|NP_623526.1\| predicted dehydrogenase and related proteins [Thermoanaerobacter tengco...	269.0	[0..2]	[358..5]
gi\|2745845 - gi\|2745845\|gb\|AAC23913.1\| NADH-dependent dehydrogenase homolog [Listeria monocytogenes]	267.0	[0..1]	[358..1]
gi\|82749925, gi\|... - gi\|82749925\|ref\|YP_415666.1\| NADH-dependent dehydrogenase [Staphylococcus aureus RF122], gi\|82655456...	263.0	[0..1]	[357..2]
gi\|25506937 - pir\|\|E89784 hypothetical protein SA0210 [imported] - Staphylococcus aureus (strain N315) gi\|15925921, gi\|... - gi\|15925921\|ref\|NP_373454.1\| hypothetical protein SA0210 [Staphylococcus aureus subsp. aureus N315],... gi\|90582884, gi\|... - gi\|90582884\|ref\|ZP_01238646.1\| Oxidoreductase, N-terminal:Oxidoreductase, C-terminal [Staphylococcus... gi\|90584937, gi\|... - gi\|90584937\|ref\|ZP_01240649.1\| Oxidoreductase, N-terminal:Oxidoreductase, C-terminal [Staphylococcus...	263.0	[0..1]	[357..2]
gi\|14245984, gi\|... - gi\|15923207\|ref\|NP_370741.1\| NADH-dependent dehydrogenase [Staphylococcus aureus subsp. aureus Mu50]... gi\|156720682, gi... - gi\|156978547\|ref\|YP_001440806.1\| hypothetical protein SAHV_0216 [Staphylococcus aureus subsp. aureus...	263.0	[0..1]	[357..2]

Back

Predicted Domain #1

Region A:
Residues: [1-358]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLKVGIIGC GGIANGKHMP SLLKAEKAEM VAFCDIVLEK AEAAAKEFGS ENASVYTNYV  60
   61 ELLQDKSIDV IHVCTPNISH AEISIAAMEA GKHVMCEKPM AKTTEEAKSM IEAAERTGKK 120
  121 LTIGYQNRFR KDSDYLHQVC ENGELGDIYY AKAKAIRRRA VPTWGVFLDE EAQGGGPLID 180
  181 IGTHALDLTL WMMDNYKPKY VVGNSYHKLA KKENAANAWG SWDPNKFTVE DSAFGFITME 240
  241 NGATIVLEAS WTLNTLDVGE ARTSLSGTEG GADMEDGLRI NGEAHSQMYE KKIQLEAGGV 300
  301 DFYDGTGDDP ALIEAEQWLE AIEKNTDPVV KPEQALVVTQ ILEAIYESSK TGQPVYFN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	1h6aA
Description:	Glucose-fructose oxidoreductase, N-terminal domain; Glucose-fructose oxidoreductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.79741889688267	bayes_pls_golite062009
oxidoreductase activity	0.120113583068184	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: