YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16804160
Organism:	Listeria monocytogenes EGD-e
Length:	753 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16804160.

Description	E-value	Query Range	Subject Range
gi\|25516978, gi\|... - pir\|\|AG1710 maltosephosphorylase homolog lin2226 [imported] - Listeria innocua (strain Clip11262), g... gi\|16801291 - gi\|16801291\|ref\|NP_471559.1\| hypothetical protein lin2226 [Listeria innocua Clip11262]	946.0	[0..1]	[753..1]
gi\|254937008 - gi\|254937008\|ref\|ZP_05268705.1\| maltose phosphorylase [Listeria monocytogenes F6900] gi\|153191644, gi... - gi\|254912681\|ref\|ZP_05262693.1\| maltose phosphorylase [Listeria monocytogenes J2818], gi\|153191644\|r... gi\|47015837, gi\|... - gi\|47095833\|ref\|ZP_00233438.1\| glycosyl transferase, family 65 [Listeria monocytogenes str. 1/2a F68... gi\|254899178 - gi\|254899178\|ref\|ZP_05259102.1\| maltose phosphorylase [Listeria monocytogenes J0161] gi\|224500213 - gi\|224500213\|ref\|ZP_03668562.1\| maltose phosphorylase [Listeria monocytogenes Finland 1988]	941.0	[0..1]	[753..1]
gi\|225877190, gi... - gi\|226224728\|ref\|YP_002758835.1\| maltosephosphorylase [Listeria monocytogenes Clip81459], gi\|2258771... gi\|46881628, gi\|... - gi\|46908357\|ref\|YP_014746.1\| glycosyl transferase family protein [Listeria monocytogenes str. 4b F23... gi\|47091791, gi\|... - gi\|47091791\|ref\|ZP_00229586.1\| glycosyl transferase, family 65 [Listeria monocytogenes str. 4b H7858...	933.0	[0..1]	[752..1]
gi\|42518299, gi\|... - gi\|42518299\|ref\|NP_964229.1\| maltose phosphorylase [Lactobacillus johnsonii NCC 533], gi\|41582583\|gb...	894.0	[0..2]	[749..1]
gi\|23003420 - gi\|23003420\|ref\|ZP_00047083.1\| COG1554: Trehalose and maltose hydrolases (possible phosphorylases) [... gi\|116094473, gi... - gi\|23003420\|ref\|ZP_00047083.1\| hypothetical protein Lgas_03001518 [Lactobacillus gasseri ATCC 33323]...	882.0	[0..1]	[750..1]
gi\|116333027, gi... - gi\|116333027\|ref\|YP_794554.1\| maltosephosphorylase [Lactobacillus brevis ATCC 367], gi\|116098374\|gb\|...	876.0	[0..3]	[750..1]
gi\|58255433, gi\|... - gi\|58338116\|ref\|YP_194701.1\| maltose phosphorylase [Lactobacillus acidophilus NCFM], gi\|58255433\|gb\|... gi\|227869611, gi... - gi\|227902705\|ref\|ZP_04020510.1\| maltose phosphorylase [Lactobacillus acidophilus ATCC 4796], gi\|2278...	875.0	[0..3]	[750..1]
gi\|27544256 - gi\|27544256\|dbj\|BAC54904.1\| maltose phosphorylase [Bacillus sp. RK-1] gi\|60729610 - gi\|60729610\|pir\|\|JC7917 maltose phosphorylase (EC 2.4.1.8) - Bacillus sp. (Strain RK-1)	872.0	[0..1]	[752..1]
gi\|69244472, gi\|... - gi\|69244472\|ref\|ZP_00602888.1\| Glycoside hydrolase, family 65, C-terminal:Glycoside hydrolase, famil... gi\|48826299 - ref\|ZP_00287521.1\| COG1554: Trehalose and maltose hydrolases (possible phosphorylases) [Enterococcus...	871.0	[0..4]	[753..5]
gi\|15988492, gi\|... - gi\|15988493\|pdb\|1H54\|B Chain B, Maltose Phosphorylase From Lactobacillus Brevis, gi\|15988492\|pdb\|1H5...	870.0	[0..3]	[738..1]

Back

Predicted Domain #1

Region A:
Residues: [1-753]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKQLFEIE PWTLRTTKLD KENKRLQESL TSLGNGYMGM RGNFEEGYSG DGHIGTYYAG  60
   61 VWFPDKTRVG WWKNGYPDYF GKVINGLNFI GIEVRLDGEK LDLFVDEVSD FELELDMEKG 120
  121 VLRRQFTVVK NNKTFRISAE RFLSVATKEL AVIHYQVEAL SSAKVELTSF LDGNVQNEDA 180
  181 NYEEMFWQEV EKASSASRGS LVTKTIPNNF GTPRFTVSAV MENKTNAANE TNQTKALYTE 240
  241 NHFQFDLQEN EVAKIEKRVV ITTSRDFEEE DILPAGEKIL QSLEIKTYEE LLTAHVAGWR 300
  301 ERWDKADVEV SGDDSAQQGI RFNIFQLFAT YYGEDARLNI GPKGFTGEKY GGATYWDTEA 360
  361 FALPMYLSLT DKSVSHNLLK YRHDQLDGAK INAQKIGLDG ALYPMVTFTG VECHNEWEIT 420
  421 FEEIHRNGAI AYAIYNYTNY TGDDSYLKTD GIEVLTEITR FWADRVHLSD RLDKYMIHGV 480
  481 TGPNEYDNNV SNNWYTNYIA AWTIRYTLEN LDAEAKKRLG VTEYEIAKWE DIEHRMYYPF 540
  541 DEKWQIFVQH DTFLDKELRS TDTLKPEDMP INQNWSWDKI LRSCFIKQAD VLQGLYLFYD 600
  601 DFDFDTKQRN FEFYEPLTVH ESSLSPAVHA VLASELGKYD KAVELYKRTA RLDLDNINND 660
  661 TEDGLHITSM AGSWLSIVQG FAGMRVTSGK LSFAPFLPNG WDNYRFKINF RDRLLEVKVE 720
  721 VGQVTVKLCH GEAINLEMYK KNYLLETAVI VEI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1h54A
Description:	Lactobacillus maltose phosphorylase, central domain; Lactobacillus maltose phosphorylase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
racemase and epimerase activity, acting on carbohydrates and derivatives	1.21567860634685	bayes_pls_golite062009
racemase and epimerase activity	1.19295069153058	bayes_pls_golite062009
catalytic activity	1.14137378674629	bayes_pls_golite062009
isomerase activity	0.62004466537384	bayes_pls_golite062009
trehalase activity	0.0297597913054797	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: