YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16804131
Organism:	Listeria monocytogenes EGD-e
Length:	507 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16804131.

Description	E-value	Query Range	Subject Range
gi\|133732292, gi... - gi\|254936976\|ref\|ZP_05268673.1\| glycine betaine transporter BetL [Listeria monocytogenes F6900], gi\|... gi\|126943862, gi... - gi\|254899210\|ref\|ZP_05259134.1\| glycine betaine transporter BetL [Listeria monocytogenes J0161], gi\|... gi\|254912649 - gi\|254912649\|ref\|ZP_05262661.1\| glycine betaine transporter BetL [Listeria monocytogenes J2818] gi\|47015805, gi\|... - gi\|47095801\|ref\|ZP_00233406.1\| glycine betaine transporter [Listeria monocytogenes str. 1/2a F6854],...	660.0	[0..1]	[507..1]
gi\|254879728 - gi\|254879728\|ref\|ZP_05252438.1\| glycine betaine transporter [Listeria monocytogenes FSL J2-071] gi\|254826264 - gi\|254826264\|ref\|ZP_05231265.1\| glycine betaine transporter [Listeria monocytogenes FSL J1-194] gi\|153167969, gi... - gi\|153167969\|ref\|ZP_01928021.1\| glycine betaine transporter [Listeria monocytogenes FSL N1-017], gi\|... gi\|255520758 - gi\|255520758\|ref\|ZP_05387995.1\| glycine betaine transporter [Listeria monocytogenes FSL J1-175] gi\|46908327, gi\|... - gi\|46908327\|ref\|YP_014716.1\| glycine betaine transporter [Listeria monocytogenes str. 4b F2365], gi\|... gi\|153203195, gi... - gi\|254931799\|ref\|ZP_05265158.1\| glycine betaine transporter [Listeria monocytogenes HPB2262], gi\|153...	658.0	[0..1]	[507..1]
gi\|1524397\|gb\|AA... - glycine betaine transporter OpuD OPUD_BACSU - Glycine betaine transporter OpuD OS=Bacillus subtilis (strain 168) GN=opuD PE=1 SV=1 OPUD_BACSU - Glycine betaine transporter OpuD OS=Bacillus subtilis GN=opuD PE=3 SV=1	651.0	[0..1]	[507..2]
gi\|26990662, gi\|... - gi\|26990662\|ref\|NP_746087.1\| choline/carnitine/betaine transporter family protein [Pseudomonas putid... tr\|E4RG06\|E4RG06... - Choline/carnitine/betaine transporter family protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIR...	643.0	[0..6]	[504..14]
gi\|25321221, gi\|... - pir\|\|AB1707 glycine betaine transporter BetL betL [imported] - Listeria innocua (strain Clip11262), ... gi\|16801262 - gi\|16801262\|ref\|NP_471530.1\| glycine betaine transporter BetL [Listeria innocua Clip11262]	643.0	[0..1]	[507..1]
gi\|52081504, gi\|... - gi\|52081504\|ref\|YP_080295.1\| glycine betaine transporter [Bacillus licheniformis ATCC 14580], gi\|520...	638.0	[0..1]	[507..1]
gi\|47019771, gi\|... - gi\|47091760\|ref\|ZP_00229555.1\| glycine betaine transporter [Listeria monocytogenes str. 4b H7858], g...	637.0	[0..26]	[507..2]
gi\|218894394, gi... - gi\|218894394\|ref\|YP_002443264.1\| putative choline transporter [Pseudomonas aeruginosa LESB58], gi\|21... gi\|194548998, gi... - gi\|84317840\|ref\|ZP_00966275.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|11351182 - pir\|\|G82985 probable choline transporter PA5291 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|53726738, gi\|... - gi\|53726738\|ref\|ZP_00141772.2\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|107104392 - gi\|107104392\|ref\|ZP_01368310.1\| hypothetical protein PaerPA_01005468 [Pseudomonas aeruginosa PACS2] gi\|15600484, gi\|... - gi\|9951605\|gb\|AAG08676.1\|AE004941_9 probable choline transporter [Pseudomonas aeruginosa PAO1], gi\|1...	630.0	[0..6]	[496..14]
gi\|194554807, gi... - gi\|84324003\|ref\|ZP_00972068.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ...	630.0	[0..6]	[496..14]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLTNVFWG SGFLVLLAVL FGAFLPEQFE TFTNHIQKFL TSNFGWYYLI VVAIIIIFCL  60
   61 FLVLSPIGSI RLGKPGEEPG YS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [83-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKSWFAMLFS AGMGIGLVFW GAAEPLSHYA VQAPGGEVGT QAAMKDALRY SFFHWGISAW  60
   61 SIYAIVALAL AYFKFRKNAP GLISATLYPI LGKHAKGPIG QLIDIIAVFA TVIGVATTLG 120
  121 LGAQQINGGL TYLFGVPNNF TVQFTIIVIV TILFMLSAMS GLDKGIQLLS NVNIYVAGVL 180
  181 LVLTLILGPT LFIMNNFTNS FGDYLQNIIQ MSFQTAPDAP D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [304-507]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARKWIDSWTI FYWAWWLSWS PFVGIFIARI SRGRTIRQFL LGVIVLPALV SVFWFAVFGG  60
   61 SAIFVEQHGN SGLSSLATEQ VLFGVFNEFP GGMMLSIVAM ILIAVFFITS ADSATFVLGM 120
  121 QTTGGSLNPP NSVKVTWGLL QAGIASVLLY AGGLTALQNA SIIAAFPFSI VIILMIVSLF 180
  181 VSLTREQEKL GLYVRPKKSQ RSQL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits