YRC Public Data Repository - Protein Structure Prediction

Protein:	Y1535_LISMO
Organism:	Listeria monocytogenes EGD-e
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1535_LISMO.

Description	E-value	Query Range	Subject Range
gi\|56380971, gi\|... - gi\|56421129\|ref\|YP_148447.1\| hypothetical protein GK2594 [Geobacillus kaustophilus HTA426], gi\|56380...	365.0	[0..1]	[241..7]
Y743_GEOMG - Probable transcriptional regulatory protein Gmet_0743 OS=Geobacter metallireducens (strain GS-15 / A...	364.0	[0..1]	[241..1]
Y2594_GEOKA - Probable transcriptional regulatory protein GK2594 OS=Geobacillus kaustophilus (strain HTA426) GN=GK... Y2594_GEOKA - UPF0082 protein GK2594 OS=Geobacillus kaustophilus GN=GK2594 PE=3 SV=2	364.0	[0..1]	[241..1]
Y2326_GEODF - Probable transcriptional regulatory protein Geob_2326 OS=Geobacter daltonii (strain DSM 22248 / JCM ...	362.0	[0..1]	[241..1]
YA74_GEOSL, Y107... - (P62036) Hypothetical UPF0082 protein GSU1074, UPF0082 protein GSU1074 OS=Geobacter sulfurreducens G... Y1074_GEOSL - Probable transcriptional regulatory protein GSU1074 OS=Geobacter sulfurreducens (strain ATCC 51573 /...	360.0	[0..1]	[241..1]
gi\|254898299, gi... - gi\|254898299\|ref\|ZP_05258223.1\| hypothetical protein LmonJ_00750 [Listeria monocytogenes J0161], gi\|... gi\|153190973, gi... - gi\|254912209\|ref\|ZP_05262221.1\| hypothetical protein LmonJ2_05385 [Listeria monocytogenes J2818], gi... gi\|254936537, gi... - gi\|254936537\|ref\|ZP_05268234.1\| hypothetical protein LmonF6_05370 [Listeria monocytogenes F6900], gi... gi\|47013918, gi\|... - gi\|47097707\|ref\|ZP_00235214.1\| conserved hypothetical protein TIGR01033 [Listeria monocytogenes str....	354.0	[0..1]	[241..1]
Y2909_BACLD - Probable transcriptional regulatory protein BLi02909/BL01150 OS=Bacillus licheniformis (strain ATCC ...	353.0	[0..1]	[238..1]
Y1570_LISIN - Probable transcriptional regulatory protein lin1570 OS=Listeria innocua serovar 6a (strain CLIP 1126... Y1570_LISIN, YF7... - (Q92BH9) Hypothetical UPF0082 protein lin1570, UPF0082 protein lin1570 OS=Listeria innocua GN=lin157...	353.0	[0..1]	[241..1]
Y2335_PELCD - Probable transcriptional regulatory protein Pcar_2335 OS=Pelobacter carbinolicus (strain DSM 2380 / ...	353.0	[0..1]	[241..1]
gi\|254878976 - gi\|254878976\|ref\|ZP_05251686.1\| hypothetical protein LmonFSL_07267 [Listeria monocytogenes FSL J2-07... gi\|254852159 - gi\|254852159\|ref\|ZP_05241507.1\| hypothetical protein LmonoFSL_02239 [Listeria monocytogenes FSL R2-5... gi\|255520703 - gi\|255520703\|ref\|ZP_05387940.1\| hypothetical protein LmonocFSL_05671 [Listeria monocytogenes FSL J1-... gi\|254992895 - gi\|254992895\|ref\|ZP_05275085.1\| hypothetical protein LmonocytoFSL_07499 [Listeria monocytogenes FSL ... gi\|153166984, gi... - gi\|153166984\|ref\|ZP_01927406.1\| conserved hypothetical protein [Listeria monocytogenes FSL N1-017], ... gi\|153202458, gi... - gi\|254931470\|ref\|ZP_05264829.1\| hypothetical protein LmonH_03542 [Listeria monocytogenes HPB2262], g... Y1554_LISMF - Probable transcriptional regulatory protein LMOf2365_1554 OS=Listeria monocytogenes serotype 4b (str... gi\|254824406 - gi\|254824406\|ref\|ZP_05229407.1\| hypothetical protein LmonFS_04534 [Listeria monocytogenes FSL J1-194... gi\|47017365, gi\|... - gi\|47094259\|ref\|ZP_00231968.1\| conserved hypothetical protein TIGR01033 [Listeria monocytogenes str.... gi\|226224136, gi... - gi\|226224136\|ref\|YP_002758243.1\| hypothetical protein Lm4b_01545 [Listeria monocytogenes Clip81459],...	352.0	[0..1]	[241..1]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGHSKWNNI QGRKNAQDSK RSKVFQKLAR EIFVAAKKGP DPSLNPSLRL VMDKAKAVNM  60
   61 PNDNIKRAID KASGNTSGEN YDEVTYEGYA PGGIAVLVHA LTDNKNRTST NVRVAFNKNG 120
  121 GSLGETGSVS YMFDRKGYLV ILREGLTVDE EEFMLEAIEA GADDVEVSED VFEIFTDPAT 180
  181 FSEVKEALQE AGYTFATAEL SMFPTVYNEI AENNQTQFDK MLEALEDDDD VQEVYTNAEI 240
  241 N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.0
Match:	1lfpA
Description:	Hypothetical protein aq1575
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits