YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16802811
Organism:	Listeria monocytogenes EGD-e
Length:	342 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16802811.

Description	E-value	Query Range	Subject Range
gi\|153184199, gi... - gi\|254899997\|ref\|ZP_05259921.1\| hypothetical protein LmonJ_09290 [Listeria monocytogenes J0161], gi\|... gi\|153190148, gi... - gi\|254911451\|ref\|ZP_05261463.1\| hypothetical protein LmonJ2_01555 [Listeria monocytogenes J2818], gi... gi\|153178858, gi... - gi\|254935777\|ref\|ZP_05267474.1\| hypothetical protein LmonF6_01560 [Listeria monocytogenes F6900], gi... gi\|47095331, gi\|... - gi\|47095331\|ref\|ZP_00232942.1\| Glycosyl hydrolase family 76 superfamily [Listeria monocytogenes str....	302.0	[0..1]	[342..1]
gi\|16799837 - gi\|16799837\|ref\|NP_470105.1\| hypothetical protein lin0763 [Listeria innocua Clip11262] gi\|25514586, gi\|... - pir\|\|AC1528 alpha-1,6-mannanase homolog lin0763 [imported] - Listeria innocua (strain Clip11262), gi...	298.0	[0..1]	[341..1]
gi\|47091720, gi\|... - gi\|47091720\|ref\|ZP_00229516.1\| Glycosyl hydrolase family 76 superfamily [Listeria monocytogenes str.... gi\|153166072, gi... - gi\|153166072\|ref\|ZP_01926715.1\| hypothetical protein LMHG_01792 [Listeria monocytogenes FSL N1-017],... gi\|254823963 - gi\|254823963\|ref\|ZP_05228964.1\| alpha-1,6-mannanase [Listeria monocytogenes FSL J1-194] gi\|254879248 - gi\|254879248\|ref\|ZP_05251958.1\| alpha-1,6-mannanase [Listeria monocytogenes FSL J2-071] gi\|254853811 - gi\|254853811\|ref\|ZP_05243159.1\| alpha-1,6-mannanase [Listeria monocytogenes FSL R2-503] gi\|255522200 - gi\|255522200\|ref\|ZP_05389437.1\| alpha-1,6-mannanase [Listeria monocytogenes FSL J1-175]	294.0	[0..1]	[342..1]
gi\|16944622, gi\|... - gi\|32405978\|ref\|XP_323602.1\| probable DFG5 protein [MIPS] [Neurospora crassa], gi\|28922795\|gb\|EAA320... gi\|85101994 - gi\|85101994\|ref\|XP_961253.1\| probable DFG5 protein [MIPS] [Neurospora crassa OR74A]	261.0	[0..4]	[334..33]
gi\|51830438 - gi\|51830438\|gb\|AAU09756.1\| YKL046C [Saccharomyces cerevisiae]	260.0	[0..4]	[342..33]
gi\|44981206 - gi\|44981206\|gb\|AAS51028.1\| ACL200Wp [Ashbya gossypii ATCC 10895] gi\|45185488, gi\|... - gi\|45185488\|ref\|NP_983204.1\| ACL200Wp [Ashbya gossypii ATCC 10895], gi\|44981206\|gb\|AAS51028.1\| ACL20...	259.0	[0..3]	[335..41]
gi\|38103573, gi\|... - gi\|39944008\|ref\|XP_361541.1\| hypothetical protein MGG_04015 [Magnaporthe grisea 70-15], gb\|EAA50256....	257.0	[0..4]	[335..34]

Back

Predicted Domain #1

Region A:
Residues: [1-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWSEYANLA QLSLEKFYLA DTKEQFLNNF YPTENPEEDN KVFNYWWLAH LVEVRLDAYL  60
   61 RTKKQADLEI AENTYMHNKN RNGETLIHDF YDDMLWNALA AYRLYKETGK PIYLEDAQLV 120
  121 WQDLVDTGWN NIMGGGFAWR RPQMYYKNTP VNAPFIILSC WLYNELNETK YLEWAMKTYE 180
  181 WQTKVLVRED GFVEDGINRL EDGAIDYEWK FTYNQGVYIG ANLELYRITK EAKYLDTANK 240
  241 TADTSLKELT EDGIFKDEGS GGDEGLFKGI FYRYFTDLIE ETADKTYRDF VLNSCQILVE 300
  301 SAKVDGYLLM GMNWKEKPSG KIPYSAELSG MIALEMAAKL ER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1vd5A
Description:	Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.632799902740898	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: