YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16802441
Organism:	Listeria monocytogenes EGD-e
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16802441.

Description	E-value	Query Range	Subject Range
gi\|47096586, gi\|... - gi\|47096586\|ref\|ZP_00234175.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes str. 1/2a F... gi\|254913642, gi... - gi\|254913642\|ref\|ZP_05263654.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes J2818], gi... gi\|126942172, gi... - gi\|254900657\|ref\|ZP_05260581.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes J0161], gi... gi\|133733724, gi... - gi\|254938027\|ref\|ZP_05269724.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes F6900], gi...	197.0	[0..1]	[266..1]
gi\|133736321, gi... - gi\|254932690\|ref\|ZP_05266049.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes HPB2262], ... gi\|47020208, gi\|... - gi\|47091531\|ref\|ZP_00229328.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes str. 4b H78... gi\|46906627, gi\|... - gi\|46906627\|ref\|YP_013016.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes str. 4b F2365...	196.0	[0..1]	[266..1]
gi\|42782087, gi\|... - gi\|42782087\|ref\|NP_979334.1\| pyrroline-5-carboxylate reductase [Bacillus cereus ATCC 10987], gi\|4273...	194.0	[0..2]	[266..3]
gi\|67849921, gi\|... - gi\|67916119\|ref\|ZP_00509840.1\| Delta 1-pyrroline-5-carboxylate reductase [Clostridium thermocellum A... gi\|196251994, gi... - gi\|196251994\|ref\|ZP_03150658.1\| pyrroline-5-carboxylate reductase [Clostridium thermocellum DSM 4150...	193.0	[0..3]	[266..4]
gi\|218541204, gi... - gi\|218898056\|ref\|YP_002446467.1\| pyrroline-5-carboxylate reductase [Bacillus cereus G9842], gi\|21854... gi\|228858122, gi... - gi\|228901519\|ref\|ZP_04065702.1\| Pyrroline-5-carboxylate reductase [Bacillus thuringiensis IBL 4222],... gi\|228908746, gi... - gi\|228908746\|ref\|ZP_04072580.1\| Pyrroline-5-carboxylate reductase [Bacillus thuringiensis IBL 200], ... gi\|75764862, gi\|... - gi\|75764862\|ref\|ZP_00744228.1\| Pyrroline-5-carboxylate reductase [Bacillus thuringiensis serovar isr...	193.0	[0..2]	[266..3]
gi\|254742822 - gi\|254742822\|ref\|ZP_05200507.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Kruger B] gi\|254738005 - gi\|254738005\|ref\|ZP_05195708.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Western N... gi\|118478317, gi... - gi\|118478317\|ref\|YP_895468.1\| pyrroline-5-carboxylate reductase [Bacillus thuringiensis str. Al Haka... gi\|254722951 - gi\|254722951\|ref\|ZP_05184739.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A1055] gi\|254682347 - gi\|254682347\|ref\|ZP_05146208.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. CNEVA-906... gi\|254760838 - gi\|254760838\|ref\|ZP_05212862.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Australia... gi\|254752322 - gi\|254752322\|ref\|ZP_05204358.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Vollum] gi\|49179716, gi\|... - gi\|49185789\|ref\|YP_029041.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Sterne], gi\|... gi\|196026096, gi... - gi\|196042612\|ref\|ZP_03109851.1\| pyrroline-5-carboxylate reductase [Bacillus cereus 03BB108], gi\|1960... gi\|177649767, gi... - gi\|177649767\|ref\|ZP_02932769.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0174], g... gi\|170130686, gi... - gi\|170704885\|ref\|ZP_02895351.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0389], g... gi\|170685208, gi... - gi\|170685208\|ref\|ZP_02876432.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0465], g... gi\|167514164, gi... - gi\|167637615\|ref\|ZP_02395894.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0193], g... gi\|167632683, gi... - gi\|167632683\|ref\|ZP_02391010.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0442], g... gi\|165868381, gi... - gi\|165868381\|ref\|ZP_02213041.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0488], g... gi\|47503437, gi\|... - gi\|47528289\|ref\|YP_019638.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. 'Ames Ancest... gi\|30257583, gi\|... - gi\|30262950\|ref\|NP_845327.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Ames], gi\|30... gi\|229268028, gi... - gi\|229603620\|ref\|YP_002867233.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0248], ... gi\|228915579, gi... - gi\|228915579\|ref\|ZP_04079166.1\| Pyrroline-5-carboxylate reductase [Bacillus thuringiensis serovar pu... gi\|227004694, gi... - gi\|227814202\|ref\|YP_002814211.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. CDC 684]...	191.0	[0..2]	[266..3]
gi\|163862929, gi... - gi\|89208025\|ref\|ZP_01186549.1\| Delta 1-pyrroline-5-carboxylate reductase [Bacillus weihenstephanensi...	191.0	[0..2]	[266..3]
gi\|52142529, gi\|... - gi\|52142529\|ref\|YP_084300.1\| pyrroline-5-carboxylate reductase [Bacillus cereus E33L], gi\|51975998\|g...	191.0	[0..2]	[266..3]
gi\|49330599, gi\|... - gi\|49479043\|ref\|YP_037056.1\| pyrroline-5-carboxylate reductase [Bacillus thuringiensis serovar konku...	191.0	[0..2]	[266..3]
gi\|28204459, gi\|... - gi\|28212016\|ref\|NP_782960.1\| pyrroline-5-carboxylate reductase [Clostridium tetani E88], gi\|28204459...	189.0	[0..2]	[266..3]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRIGFIGAG NMGTAMIRGL AQANLVKREE IIVGGRNLEK LKPLEAEFTG LQITTDTEKL  60
   61 VEQADIIILA VKPYTIPEIL TSVKEKLTPD KIIISVAAGV TIQDLEELTS AKTKIVRVMP 120
  121 NTPALVGEAM SSVSPNTNVT SEELKEVTAI FTSFGEAEVV SENLMDAVIG VSGSSPAYVY 180
  181 MFIEALADGA VLSGMPRDKA YKFAAQAVLG AAKTVLETGE HPGKLKDMVT SPGGTTIEAV 240
  241 KSLENDGFRS AVINAVQAAA KKNSSM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.221849
Match:	2izzA
Description:	No description for 2izzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits