YRC Public Data Repository - Protein Structure Prediction

Protein:	CCDS8889.1_1
Organism:	Chlorocebus aethiops
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDS8889.1_1.

Description	E-value	Query Range	Subject Range
gi\|119617230 - gi\|119617230\|gb\|EAW96824.1\| biogenesis of lysosome-related organelles complex-1, subunit 1 [Homo sap... BL1S1_PONAB - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Pongo abelii GN=BLOC1S1 PE=2 SV=2 gi\|55638225 - gi\|55638225\|ref\|XP_509120.1\| PREDICTED: similar to GCN5-like 1; GCN5L1 [Pan troglodytes]	178.0	[0..1]	[125..29]
BL1S1_MOUSE - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Mus musculus GN=Bloc1s1 PE=1 SV=2	163.0	[0..1]	[125..1]
CE00629 - status:Confirmed UniProt:Q22616 protein_id:CAA83011.1	157.0	[0..5]	[124..1]
gi\|157774079 - gi\|157774079\|ref\|XP_001665105.1\| hypothetical protein CBG09808 [Caenorhabditis briggsae AF16] gi\|187031298, gi... - gi\|39590604\|emb\|CAE64974.1\| Hypothetical protein CBG09808 [Caenorhabditis briggsae], gi\|187031298\|em...	154.0	[0..2]	[123..4]
gi\|51950091, gi\|... - gi\|51950091\|gb\|AAH82449.1\| MGC84073 protein [Xenopus laevis], gi\|148235775\|ref\|NP_001087901.1\| MGC84...	153.0	[0..1]	[125..1]
gi\|18000275 - gi\|18000275\|gb\|AAL54899.1\|AF159544_1 GCN5-like protein [Lapemis hardwickii]	151.0	[0..1]	[125..1]
BL1S1_XENTR - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropicalis GN=bloc1s1 PE=2 ...	151.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRLLKEHQ AKQNERKELQ EKRRREAITA ATCLTEALVD HLNVGVAQAY MNQRKLDHEV  60
   61 KTLQVQAAQF AKQTGQWIGM VENFNQALKE IGDVENWARS IELDMRTIAT ALEYVYKGQL 120
  121 QSAPS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	101.251812
Match:	PF06320.4
Description:	No description for PF06320.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.984	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.979	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.975	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.971	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.959	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.956	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.956	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.955	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.944	N/A	N/A	a.216.1	Description not found.
View	Download	0.942	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.758	N/A	N/A	d.67.3	Ribosome recycling factor, RRF
View	Download	0.749	N/A	N/A	f.21.2	Fumarate reductase respiratory complex transmembrane subunits
View	Download	0.705	N/A	N/A	d.67.3	Ribosome recycling factor, RRF
View	Download	0.697	N/A	N/A	d.67.3	Ribosome recycling factor, RRF
View	Download	0.693	N/A	N/A	f.21.2	Fumarate reductase respiratory complex transmembrane subunits

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits