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View Structure Prediction Details

Protein: gi|51477443, gi|...
Organism: Arabidopsis thaliana
Length: 705 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51477443, gi|....

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
347.0 [0..6] [695..696]

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Predicted Domain #1
Region A:
Residues: [1-201]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVSRSSSL YTEEDPLQAY SGLSLFPRTL KSLSNPLPPS YQSEDLQQTH TLLQSMPFEI  60
   61 QSEHQEQAKA ILEDVDVDVQ LNPIPNKRER RPGLDRKRKS FSLHLTTSQP PPVAPSFDPS 120
  121 KYPRSEDFFA AYDKFELANR EWQKQTGSSV IDIQENPPSR RPRRPGIPGR KRRPFKESFT 180
  181 DSYFTDVINL EASEKEIPIA S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [202-347]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQSLESATAA HVTTVDREVD DSTVDTDKDL NNVLKDLLAC SREELEGDGA IKLLEERLQI  60
   61 KSFNIEKFSI PEFQDVRKMN LKASGSNPPN RKSLSDIQNI LKGTNRVAVR KNSHSPSPQT 120
  121 IKHFSSPNPP VDQFSFPDIH NLLPGD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [348-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQPSEVNVQP IAKDIPNTSP TNVGTVDVAS PFNDSVVKRS GEDDSHIHSG IHRSHLSRDG  60
   61 NPDICVMDSI SNRSSAMLQK NVDMRTKGKE VDVPMSESGA NRNTGDREND AEINEETDNL 120
  121 ERLAECASKE VTRPFTVEED SIPYQQGASS KSPNRAPEQY NTMGGSLEHA EHNQGLHEEE 180
  181 NVNTGSASGL QVENAPEVHK YSHKQTN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [555-705]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRRKRGSSDS NVKKRSKTVH GETGGDKQMK TLPHESRAKK QTKGKSNERE EKKPKKTLTH  60
   61 EGKLFSCRKS LAAAGTKIEG GVRRSTRIKS RPLEYWRGER FLYGRIHESL TTVIGIKYAS 120
  121 PGEGKRDSRA SKVKSFVSDE YKKLVDFAAL H

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle