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View Structure Prediction Details

Protein: gi|31616515, gi|...
Organism: Arabidopsis thaliana
Length: 583 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|31616515, gi|....

Description E-value Query
Range
Subject
Range
gi|18410372, gi|... - gi|31616517|gb|AAP55750.1| LAF3 isoform 2 [Arabidopsis thaliana], gi|18410372|ref|NP_567027.1| LAF3/...
345.0 [0..8] [583..1]

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Predicted Domain #1
Region A:
Residues: [1-583]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGWYEFPVM IGFVSAAVFL LISVAYLPLL NDLYWSTLKS PTPPAGIVAD LLVTNGTIFT  60
   61 SDSSLPFADS MAIRNGRILK VGSFATLKGF IGDGTMEVNL EGKIVVPGLI DSHVHLISGG 120
  121 LQMAQVGLRG VSQKDEFCKM VKDAVQNAKE GSWILGGGWN NDFWGGELPS ASWIDEISPR 180
  181 NPVWLIRMDG HMALANSLAL KIAGVISLTE DPVGGTIMRM PSGEPTGLLI DAAMELVTPW 240
  241 VKEISVDERR EALFRASKYA LTRGVTTVID LGRYFPGTTD ELSWKDFQDV YLYADSSKKM 300
  301 MIRTCLFFPI TTWSRLLDLK LQKGSVLSEW LYLGGVKAFI DGSLGSNSAL FYEEYIDTPN 360
  361 NYGLEVMDPE KLSNFTMAAD KSGLQVAIHA IGDKANDMIL DMYESVAAAN GDRDRRFRIE 420
  421 HAQHLAPGSA NRFGQLHIVA SVQPDHLLDD ADSVAKKLGS ERAVKESYLF QSLLNGNALL 480
  481 ALGSDWPVAD INPLHSIRTA VKRIPPKWDH AWIPSERISF TDALIAQTIS AARAAFLDHH 540
  541 LGSLSPGKLA DFVILSTNSW DEFSKDVSAS VLATYVGGKQ LYP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1rjpA
Description: Crystal structure of D-aminoacylase in complex with 100mM CuCl2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 2.89663896697662 bayes_pls_golite062009
catalytic activity 1.70199291046899 bayes_pls_golite062009
peptidase activity 0.531583397695361 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.0416211123846697 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle