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View Structure Prediction Details

Protein: NHX7_ARATH
Organism: Arabidopsis thaliana
Length: 1146 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for NHX7_ARATH.

Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTVIDATMA YRFLEEATDS SSSSSSSKLE SSPVDAVLFV GMSLVLGIAS RHLLRGTRVP  60
   61 YTVALLVIGI ALGSLEYGAK HNLGKIGHGI RIWNEIDPEL LLAVFLPALL FESSFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.221849
Match: 1occA
Description: Mitochondrial cytochrome c oxidase, subunit I
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [117-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVHQIKRCL GQMVLLAVPG VLISTACLGS LVKVTFPYEW DWKTSLLLGG LLSATDPVAV  60
   61 VALLKELGAS KKLSTIIEGE SLMNDGTAIV VFQLFLKMAM GQNSDWSSII KFLLKVALGA 120
  121 VGIGLAFGIA SVIWLKFIFN DTVIEITLTI AVSYFAYYTA QEWAGASGVL TVMTLGMFYA 180
  181 AFARTAFKGD SQKSLHHFWE MVAYIANTLI FILSGVVIAE GILDSDKIAY QGNSWRFLFL 240
  241 LYVYIQLSRV VVVGVLYPLL CRFGYGLDWK ESIILVWSGL RGAVALALSL SVKQSSGNSH 300
  301 ISKETGTLFL FFTGGIVFLT LIVNGSTTQF VLRLLRMDIL PAPKKRILEY TKYEMLNKAL 360
  361 RAFQDLGDDE ELGPADWPTV ESYISSLKGS EGELVHHPHN GS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1kplA
Description: Clc chloride channel
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [519-611]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIGSLDPKSL KDIRMRFLNG VQATYWEMLD EGRISEVTAN ILMQSVDEAL DQVSTTLCDW  60
   61 RGLKPHVNFP NYYNFLHSKV VPRKLVTYFA VER

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [612-924]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LESACYISAA FLRAHTIARQ QLYDFLGESN IGSIVINESE KEGEEAKKFL EKVRSSFPQV  60
   61 LRVVKTKQVT YSVLNHLLGY IENLEKVGLL EEKEIAHLHD AVQTGLKKLL RNPPIVKLPK 120
  121 LSDMITSHPL SVALPPAFCE PLKHSKKEPM KLRGVTLYKE GSKPTGVWLI FDGIVKWKSK 180
  181 ILSNNHSLHP TFSHGSTLGL YEVLTGKPYL CDLITDSMVL CFFIDSEKIL SLQSDSTIDD 240
  241 FLWQESALVL LKLLRPQIFE SVAMQELRAL VSTESSKLTT YVTGESIEID CNSIGLLLEG 300
  301 FVKPVGIKEE LIS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.69897
Match: 2byvE
Description: Structure of the cAMP responsive exchange factor Epac2 in its auto- inhibited state
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [925-1146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPAALSPSNG NQSFHNSSEA SGIMRVSFSQ QATQYIVETR ARAIIFNIGA FGADRTLHRR  60
   61 PSSLTPPRSS SSDQLQRSFR KEHRGLMSWP ENIYAKQQQE INKTTLSLSE RAMQLSIFGS 120
  121 MVNVYRRSVS FGGIYNNKLQ DNLLYKKLPL NPAQGLVSAK SESSIVTKKQ LETRKHACQL 180
  181 PLKGESSTRQ NTMVESSDEE DEDEGIVVRI DSPSKIVFRN DL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle