YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CHLI2_ARATH
Organism: Arabidopsis thaliana
Length: 418 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHLI2_ARATH.

Description E-value Query
Range
Subject
Range
gi|77639083, gi|... - gi|77685113|ref|ZP_00800523.1| Helix-turn-helix, Fis-type [Alkaliphilus metalliredigenes QYMF], gi|7...
284.0 [0..1] [416..48]

Back

Predicted Domain #1
Region A:
Residues: [1-64]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLGRSPS SILTCPRISS PSSTSSMSHL CFGPEKLSGR IQFNPKKNRS RYHVSVMNVA  60
   61 TEIN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.30103
Match: 1yioA
Description: Crystallographic structure of response regulator StyR from Pseudomonas fluorescens
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [65-418]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVEQAKKIDS KESARPVYPF AAIVGQDEMK LCLLLNVIDP KIGGVMIMGD RGTGKSTTVR  60
   61 SLVDLLPEIT VVSGDPYNSD PRDPECMGKE VREKVQKGEE LSVIETKINM VDLPLGATED 120
  121 RVCGTIDIEK ALTEGVKAFE PGLLAKANRG ILYVDEVNLL DDHLVDVLLD SAASGWNTVE 180
  181 REGISISHPA RFILIGSGNP EEGELRPQLL DRFGMHAQVG TVRDAELRVK IVEERARFDS 240
  241 NPKEFRETYQ EEQLKLQEQI TTARSNLSAV QIDQDLKVKI SKVCAELDVD GLRGDMVINR 300
  301 AARALAALQG RDQVTAEDVG IVIPNCLRHR LRKDPLESMD SGILVTEKFY EVFT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.39794
Match: 1g8pA
Description: ATPase subunit of magnesium chelatase, BchI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.470983068319171 bayes_pls_golite062009
hydrolase activity 0.0582794297634999 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle