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View Structure Prediction Details

Protein: gi|52354125, gi|...
Organism: Arabidopsis thaliana
Length: 303 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52354125, gi|....

Description E-value Query
Range
Subject
Range
gi|25402766, gi|... - gi|8778385|gb|AAF79393.1|AC068197_3 F16A14.4 [Arabidopsis thaliana], pir||E86271 protein F16A14.4 [i...
306.0 [0..1] [303..1]

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Predicted Domain #1
Region A:
Residues: [1-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRVFYKRA RDDLSYCHRL LHIPYNEPEP DSKAISEIVG IVSKKEEAVV VTEPTHHWRK  60
   61 NWEDLRKNRL TASNFARAIG FSPDGRRNLW LEKIGAAKPF AGNRATFWDI ENEVEALERY 120
  121 NELTGNEILI PEFVVYKNGE SPEENWLGAS PDGVINVVKD GVTSCGVLEV KCPFDNRDNS 180
  181 KVYPWKKVPY NCVPQLQGLM EIVDTDWLDL YCWTRNGSSL FRVWRDTAFW EDMKPALFDF 240
  241 WQNHVLPARE IYNNFDIKDP QVKLREFKPK HWHEDCKKIM RGAERISANA NRLFYEIDGN 300
  301 LVD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.69897
Match: 1avqA
Description: lambda exonuclease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.286388432783973 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle