YRC Public Data Repository - Protein Structure Prediction

Protein:	LHCA2_ARATH
Organism:	Arabidopsis thaliana
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LHCA2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|11277629, gi\|... - gi\|6850838\|emb\|CAB71077.1\| Lhca2 protein [Arabidopsis thaliana], gi\|15233120\|ref\|NP_191706.1\| LHCA2 ...	265.0	[0..1]	[257..1]
gi\|215678915, gi... - gi\|51979014\|ref\|XP_507384.1\| PREDICTED OJ1065_B06.19-1 gene product [Oryza sativa (japonica cultivar... gi\|125558916 - gi\|125558916\|gb\|EAZ04452.1\| hypothetical protein OsI_26600 [Oryza sativa Indica Group]	244.0	[0..2]	[257..8]
gi\|398599, gi\|480616 - pir\|\|S37099 chlorophyll a/b binding protein - prince's feather, gi\|398599\|emb\|CAA52750.1\| chlorophyl...	243.0	[0..1]	[256..1]
CB2A_SPIOL - Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1	242.0	[0..1]	[256..1]
CB21_GOSHI - Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2	242.0	[0..1]	[256..1]
CB12_SOLLC - Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1	242.0	[0..2]	[257..17]
gi\|556367 - gi\|556367\|gb\|AAA50310.1\| light-harvesting chlorophyll a/b-binding protein	242.0	[0..1]	[256..1]
gi\|20939, gi\|99492 - pir\|\|S22522 chlorophyll a/b-binding protein (cab-6) precursor - Japanese black pine, gi\|20939\|emb\|CA...	241.0	[0..1]	[256..1]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST  60
   61 PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW AMLGAAGIFI PEFLTKIGIL 120
  121 NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD 180
  181 VGYPGGLWFD PLGWGSGSPA KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA 240
  241 HLADPGHATI FAAFTPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	2o012
Description:	No description for 2o012 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits