YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|30793847, gi|...
Organism: Arabidopsis thaliana
Length: 255 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30793847, gi|....

Description E-value Query
Range
Subject
Range
gi|62640940, gi|... - gi|62640940|ref|XP_574497.1| PREDICTED: similar to Alkaline phytoceramidase (aPHC) (Alkaline ceramid...
295.0 [0..2] [250..141]

Back

Predicted Domain #1
Region A:
Residues: [1-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGISSFWG PVTSTIECCE MNYAYSSYIA EFYNTISNVP GILLALIGLV NALRQRFEKR  60
   61 FSILHISNMI LAIGSMLYHA TLQHVQQQSD ETPMVWEILL YMYILYSPDW HYRSTMPTFL 120
  121 FLYGAAFAIV HAYLRFGIGF KVHYVILCLL CIPRMYKYYI HTEDTAAKRI AKWYVATILV 180
  181 GSICWFCDRV FCKTISQWPV NPQGHALWHV FMSFNSYCAN TFLMFCRAQQ RGWNPKVKYF 240
  241 LGVLPYVKIE KPKTQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle