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View Structure Prediction Details

Protein: gi|42561586, gi|...
Organism: Arabidopsis thaliana
Length: 241 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42561586, gi|....

Description E-value Query
Range
Subject
Range
gi|25518458, gi|... - gi|9665145|gb|AAF97329.1|AC023628_10 Similar to pathogenesis-related proteins [Arabidopsis thaliana]...
196.0 [0..25] [241..67]

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Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELRKRKIRA PLHIFVGITF FLLQLWSGTA QINHEDSSTK PSVKNSPSAT STRLLLSPPS  60
   61 FTGNRFSFRF RWRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [75-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRRRNRVNRA SREFLIAHNL VRARVGEPPF QWDGRLAAYA RTWANQRVGD CRLVHSNGPY  60
   61 GENIFWAGKN NWSPRDIVNV WADEDKFYDV KGNTCEPQHM CGHYTQIVWR DSTKVGCASV 120
  121 DCSNGGVYAI CVYNPPGNYE GENPFGSYDD QIGLARDDPP AVIGGMA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.69897
Match: 1cfeA
Description: P14A, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle