YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17431705
Organism:	Ralstonia solanacearum
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17431705.

Description	E-value	Query Range	Subject Range
gi\|87200830, gi\|... - gi\|87200830\|ref\|YP_498087.1\| hypothetical protein Saro_2817 [Novosphingobium aromaticivorans DSM 124...	261.0	[0..7]	[215..35]
gi\|84712740, gi\|... - gi\|84712740\|ref\|ZP_01020620.1\| possible acyl transferase [Polaromonas naphthalenivorans CJ2], gi\|846...	259.0	[0..4]	[215..14]
gi\|167425923, gi... - gi\|167425923\|ref\|ZP_02317676.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... gi\|167418817, gi... - gi\|167418817\|ref\|ZP_02310570.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... gi\|170026328, gi... - gi\|170026328\|ref\|YP_001722833.1\| hypothetical protein YPK_4121 [Yersinia pseudotuberculosis YPIII], ... gi\|167468404 - gi\|167468404\|ref\|ZP_02333108.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... gi\|186893426, gi... - gi\|186893426\|ref\|YP_001870538.1\| hypothetical protein YPTS_0082 [Yersinia pseudotuberculosis PB1/+],... gi\|22123976, gi\|... - gi\|22123976\|ref\|NP_667399.1\| hypothetical protein y0055 [Yersinia pestis KIM], gi\|21956715\|gb\|AAM836... gi\|25509516 - pir\|\|AB0011 probable transferase [imported] - Yersinia pestis (strain CO92) gi\|150260856, gi... - gi\|150260856\|ref\|ZP_01917584.1\| possible transferase [Yersinia pestis CA88-4125], gi\|149290264\|gb\|ED... gi\|115345912, gi... - gi\|218927301\|ref\|YP_002345176.1\| hypothetical protein YPO0082 [Yersinia pestis CO92], gi\|16120433\|re... gi\|51594436, gi\|... - gi\|51594436\|ref\|YP_068627.1\| hypothetical protein YPTB0078 [Yersinia pseudotuberculosis IP 32953], g... gi\|229706645, gi... - gi\|229836197\|ref\|ZP_04456365.1\| possible transferase [Yersinia pestis Pestoides A], gi\|229706645\|gb\|... gi\|162353916, gi... - gi\|77633903\|ref\|ZP_00796016.1\| COG0684: Demethylmenaquinone methyltransferase [Yersinia pestis Angol... gi\|165936164, gi... - gi\|89103454\|ref\|ZP_01176031.1\| COG0684: Demethylmenaquinone methyltransferase [Yersinia pestis biova... gi\|165989611, gi... - gi\|166011465\|ref\|ZP_02232363.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... gi\|229839933, gi... - gi\|229839933\|ref\|ZP_04460092.1\| possible transferase [Yersinia pestis biovar Orientalis str. PEXU2],... gi\|117671930, gi... - gi\|77630841\|ref\|ZP_00793427.1\| COG0684: Demethylmenaquinone methyltransferase [Yersinia pseudotuberc... gi\|108781363, gi... - gi\|108809450\|ref\|YP_653366.1\| hypothetical protein YPA_3459 [Yersinia pestis Antiqua], gi\|108781363\|... gi\|165926105, gi... - gi\|165926105\|ref\|ZP_02221937.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... gi\|229842015, gi... - gi\|229842015\|ref\|ZP_04462170.1\| possible transferase [Yersinia pestis biovar Orientalis str. India 1... gi\|108813926, gi... - gi\|229904456\|ref\|ZP_04519567.1\| possible transferase [Yersinia pestis Nepal516], gi\|229678574\|gb\|EEO... gi\|167399092, gi... - gi\|167399092\|ref\|ZP_02304616.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... gi\|166205055, gi... - gi\|166213653\|ref\|ZP_02239688.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... Q66GA4\|Q66GA4_YERPS - Possible transferase - Yersinia pseudotuberculosis gi\|145601063, gi... - gi\|145601063\|ref\|YP_001165139.1\| hypothetical protein YPDSF_3821 [Yersinia pestis Pestoides F], gi\|1...	252.0	[0..9]	[215..20]
gi\|84668630, gi\|... - gi\|84683887\|ref\|ZP_01011790.1\| hypothetical protein RB2654_20978 [Rhodobacterales bacterium HTCC2654...	250.0	[0..7]	[215..19]
gi\|19918963 - gi\|19918963\|dbj\|BAB88738.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase [Sphingomonas paucimobilis]	249.0	[0..9]	[215..19]
gi\|15074699 - gi\|15074699\|emb\|CAC46344.1\| Demethylmenaquinone methyltransferase [Sinorhizobium meliloti 1021] gi\|15965518 - gi\|15965518\|ref\|NP_385871.1\| hypothetical protein SMc00502 [Sinorhizobium meliloti 1021]	247.0	[0..7]	[215..12]
gi\|72603506, gi\|... - gi\|89899151\|ref\|YP_521622.1\| hypothetical protein Rfer_0337 [Rhodoferax ferrireducens T118], gi\|8934...	247.0	[0..4]	[215..12]
gi\|83748791, gi\|... - gi\|83748791\|ref\|ZP_00945805.1\| Hypothetical Protein RRSL_01131 [Ralstonia solanacearum UW551], gi\|83... gi\|206592945, gi... - gi\|207739565\|ref\|YP_002257958.1\| dimethylmenaquinone methyltransferase; protein [Ralstonia solanacea...	246.0	[0..1]	[216..1]
gi\|112821458, gi... - gi\|113473778\|ref\|YP_718041.1\| hypothetical protein pCAR3_100 [Sphingomonas sp. KA1], gi\|112821458\|db...	245.0	[0..8]	[215..19]
gi\|90415599, gi\|... - gi\|90415599\|ref\|ZP_01223533.1\| hypothetical protein GB2207_09786 [marine gamma proteobacterium HTCC2... gi\|90415599\|ref\|... - hypothetical protein GB2207_09786 [marine gamma proteobacterium HTCC2207]	243.0	[0..5]	[215..12]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTMHLSQDP LAALQRFGTA TIHEAQGQRG AIDPRIAALD PARRLVGRAL TVDMRPSDNL  60
   61 MIHYALTKAR PGDVLVVDAK GFVDAGPWGD ILTLAAQEIG MAGLVIDGAV RDADSIIEMG 120
  121 FPVFCRGLCI KGTNKHQPGR VNVPVVIGGV PIQPGDVMVG DRDGLVVVAA DEVDAVIRAS 180
  181 EARERKEAEM RERLKQGATM VELLGLQDTL NRYGLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	2c5qA
Description:	Crystal structure of yeast YER010Cp
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits