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View Structure Prediction Details

Protein: gi|1524397|gb|AA...
Organism: Bacillus subtilis subsp. subtilis str. JH642
Length: 512 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1524397|gb|AA....

Description E-value Query
Range
Subject
Range
gi|26990662, gi|... - gi|26990662|ref|NP_746087.1| choline/carnitine/betaine transporter family protein [Pseudomonas putid...
tr|E4RG06|E4RG06... - Choline/carnitine/betaine transporter family protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIR...
623.0 [0..4] [507..11]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKHISSVFW IVIAITAAAV LWGVISPDSL QNVSQSAQAF ITDSFGWYYL LVVSLFVGFC  60
   61 LFLIFSPIGK IKLGKPDEKP EFGLLSWFAM LFSAGMGIGL VFYGAAEPIS HYAISSPSGE 120
  121 TETPQAFRDA LRYTFFHWGL HAWAIYAIVA LCIAYFQFRK GAPGLISSTL SPILGDKVNG 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [181-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIGKAIDCIA VFATVVGVST SLGLGATQIN GGLNYLFGIP NAFIVQLVLI IIVTVLFLLS  60
   61 AWSGLGKGIK YLSNTNMVLA GLLMLFMLVV 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [271-512]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPTVLIMNSF TDSIGQYIQN IVQMSFRLTP NDPEKREWIN SWTIFYWAWW ISWSPFVGIF  60
   61 IARVSRGRTI REFLIGVLVT PCILTFLWFS IFGVSAMDLQ QKGAFNVAKL STETMLFGTL 120
  121 DHYPLTMVTS ILALILIAVF FITSADSATF VLGMQTSYGS LNPANSVKLS WGIIQSAMAA 180
  181 VLLYSGGLAA LQNTAILAAL PFSIVILLMI ASLYQSLSKE RREIKKAEKL DKPRSPRVKK 240
  241 AY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle