YRC Public Data Repository - Protein Structure Prediction

Protein:	ENSPTRT00000033950
Organism:	Pan troglodytes
Length:	361 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENSPTRT00000033950.

Description	E-value	Query Range	Subject Range
gi\|114608154 - gi\|114608154\|ref\|XP_001143816.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]	0.0	[1..361]	[113..473]
gi\|197099156 - gi\|197099156\|ref\|NP_001124562.1\| transmembrane protein 30A [Pongo abelii] gi\|55729312 - gi\|55729312\|emb\|CAH91391.1\| hypothetical protein [Pongo abelii]	0.0	[1..361]	[100..460]
gi\|73973318 - gi\|73973318\|ref\|XP_532208.2\| PREDICTED: similar to transmembrane protein 30A isoform 1 [Canis famili...	0.0	[1..361]	[1..361]
gi\|182891566, gi... - gi\|28278957\|gb\|AAH45515.1\| Zgc:77655 [Danio rerio], gi\|27882491\|gb\|AAH44384.1\| Zgc:77655 [Danio reri...	0.0	[1..359]	[1..366]
gi\|89268252, gi\|... - gi\|89268252\|emb\|CAJ82682.1\| novel protein containing LEM3 (ligand-effect modulator 3)/CDC50 domain [...	0.0	[1..359]	[1..363]
gi\|147902164, gi... - gi\|27924227\|gb\|AAH45047.1\| Cg9947-prov protein [Xenopus laevis], gi\|147902164\|ref\|NP_001080854.1\| hy...	0.0	[1..359]	[1..363]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMNYNAKDE VDGGPPCAPG GTAKTRRPDN TAFKQQRLPA WQPILTAGTV LPIFFIIGLI  60
   61 FIPIGIGIFV TSNNIREIEI DYTGTEPSSP CNKCLSPDVT PCFCTINFTL EKSFEGNVFM 120
  121 YYGLSNFYQN HRRYVKSRDD SQLNGDSSAL LNPSKECEPY RRNEDKPIAP CGAIANSMFN 180
  181 DTLELFLIGN DSY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [194-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIPIALKKKG IAWWTDKNVK FRNPPGGDNL EERFKGTTKP VNWLKPVYML DSDPDNNGFI  60
   61 NEDFIVWMRT AALPTFRKLY RLIERKSDLH PTLPAGRYSL NVTYNYPVHY FDGRKRMILS 120
  121 TISWMGGKNP FLGIAYIAVG SISFLLGVVL LVINHKYRNS SNTADITI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits