YRC Public Data Repository - Protein Structure Prediction

Protein:	ENSPTRT00000033663
Organism:	Pan troglodytes
Length:	346 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENSPTRT00000033663.

Description	E-value	Query Range	Subject Range
gi\|34874462, gi\|... - gi\|56605738\|ref\|NP_001008331.1\| polymerase (RNA) I polypeptide C [Rattus norvegicus], gi\|55778316\|gb...	0.0	[1..346]	[1..346]
RPAC1_BOVIN - DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus GN=POLR1C PE=2 SV=1	0.0	[1..346]	[1..346]
gi\|57094492 - gi\|57094492\|ref\|XP_532147.1\| PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa polypeptide ...	0.0	[1..346]	[1..346]
RPAC1_MOUSE - DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus GN=Polr1c PE=1 SV=3	0.0	[1..346]	[1..346]
gi\|68401632, gi\|... - gi\|68401632\|ref\|XP_685461.1\| PREDICTED: similar to RNA polymerase 1-1 isoform 1 [Danio rerio], gi\|41...	0.0	[1..346]	[1..347]
gi\|14198113 - gi\|14198113\|gb\|AAH08118.1\| POLR1C protein [Homo sapiens]	0.0	[9..346]	[1..338]

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Predicted Domain #1

Region A:
Residues: [1-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASQAVEEM RSRVVLGEFG VRNVHTTDFP GNYSGYDDAW DQDRFEKNFR VDVVHMDENS  60
   61 LEFDMVGIDA AIANAFRRIL LAEVPTMAVE KVLVYNNTSI VQDEILAHRL GLIPIHADPR 120
  121 LFEYRNQGDE EGTEIDTLQF RLQVRCTRNP HAAKDSSDPN ELYVNHKVYT RHMTWIPLGN 180
  181 QADLFPEGTI RPVHDDILIA QLRPGQEIDL LMHCVKGIGK DHAKFSPVAT ASYRLLPDIT 240
  241 LLEPVEGEAA EELSRCFSPG VIEVQEVQGK KVARVANPRL DTFSREIFRN EKLKKVVRLA 300
  301 RVRDHYIFSV ESTGVLPPDV LVSEAIKVLM GKCRRFLDEL DAVQMD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	1i3qC
Description:	RPB3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits