YRC Public Data Repository - Protein Structure Prediction

Protein:	ENSPTRT00000027670
Organism:	Pan troglodytes
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENSPTRT00000027670.

Description	E-value	Query Range	Subject Range
HGNC:29527\|Ensem... - hypoxia inducible domain family, member 1A gi\|48146887, gi\|... - gi\|7661620\|ref\|NP_054775.1\| HIG1 domain family, member 1A [Homo sapiens], pir\|\|T14766 hypothetical p... gi\|117646476 - gi\|117646476\|emb\|CAL38705.1\| hypothetical protein [synthetic construct]	9.0E-38	[1..93]	[1..93]
HIG1A_MOUSE - HIG1 domain family member 1A, mitochondrial OS=Mus musculus GN=Higd1a PE=1 SV=1	1.0E-37	[1..93]	[1..93]
gi\|109041237, gi... - gi\|109041240\|ref\|XP_001115232.1\| PREDICTED: HIG1 domain family, member 1A isoform 3 [Macaca mulatta]...	4.0E-37	[1..93]	[1..93]
gi\|73989865, gi\|... - gi\|73989865\|ref\|XP_861494.1\| PREDICTED: similar to hypoxia induced gene 1 isoform 2 [Canis familiari...	1.0E-36	[1..93]	[1..93]
HIG1A_RAT - HIG1 domain family member 1A, mitochondrial OS=Rattus norvegicus GN=Higd1a PE=1 SV=2	2.0E-36	[1..93]	[1..93]
gi\|119916037, gi... - gi\|94534984\|gb\|AAI16169.1\| HIG1 domain family, member 1D [Bos taurus], gi\|119916037\|ref\|XP_001249479...	5.0E-36	[1..93]	[1..93]
gi\|114595642 - gi\|114595642\|ref\|XP_001138606.1\| PREDICTED: similar to HSPC010 [Pan troglodytes]	6.0E-32	[1..87]	[1..87]
gi\|54037953, gi\|... - gi\|89268986\|emb\|CAJ81972.1\| hypoxia induced gene 1 [Xenopus tropicalis], gi\|58332310\|ref\|NP_00101105...	8.0E-31	[1..91]	[1..93]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDTGVSLP SYEEDQGSKL IRKAKEAPFV PVGIAGFAAI VAYGLYKLKS RGNTKMSIHL  60
   61 IHMRVAAQGF VVGAMTVGMG YSMYREFWAK PKP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.920819
Match:	PF04588.4
Description:	No description for PF04588.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits