YRC Public Data Repository - Protein Structure Prediction

Protein:	ENSPTRT00000018753
Organism:	Pan troglodytes
Length:	310 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENSPTRT00000018753.

Description	E-value	Query Range	Subject Range
FAM108A3, FAM108A2 - family with sequence similarity 108, member A3, family with sequence similarity 108, member A2	1.0E-57	[1..310]	[1..310]
gi\|57102220 - gi\|57102220\|ref\|XP_542194.1\| PREDICTED: similar to CG33096-PB, isoform B isoform 1 [Canis familiaris...	1.0E-56	[1..310]	[1..310]
gi\|114598866 - gi\|114598866\|ref\|XP_512244.2\| PREDICTED: similar to FAM108A1 protein isoform 2 [Pan troglodytes]	2.0E-56	[1..310]	[1..310]
AB17C_CHICK - Protein ABHD17C OS=Gallus gallus GN=ABHD17C PE=2 SV=1	3.0E-56	[1..308]	[8..310]
gi\|17391206, gi\|... - gi\|19526906\|ref\|NP_598483.1\| hypothetical protein LOC70178 [Mus musculus], gi\|17391206\|gb\|AAH18511.1...	9.0E-56	[1..308]	[1..313]
AB17A_BOVIN - Protein ABHD17A OS=Bos taurus GN=ABHD17A PE=2 SV=1	1.0E-55	[1..310]	[1..310]
AB17C_XENLA - Protein ABHD17C OS=Xenopus laevis GN=abhd17c PE=2 SV=1	1.0E-55	[1..308]	[8..311]
AB17C_XENTR - Protein ABHD17C OS=Xenopus tropicalis GN=abhd17c PE=2 SV=1	1.0E-55	[1..308]	[8..310]
AB17C_MOUSE - Protein ABHD17C OS=Mus musculus GN=Abhd17c PE=1 SV=2 gi\|197246907, gi... - gi\|198278407\|ref\|NP_001094206.1\| hypothetical protein LOC361601 [Rattus norvegicus], gi\|197246907\|gb...	4.0E-55	[1..308]	[8..320]

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Predicted Domain #1

Region A:
Residues: [1-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGLSLSELC CLFCCPPCPG RIAAKLAFLP PEATYSLVPE PEPGPGGAGA APLGTLRASS  60
   61 GAPGRWKLHL TERADFQYSQ RELDTIEVFP TKSARGNRVS CMYVRCVPGA RYTVLFSHGN 120
  121 AVDLGQMSSF YIGLGSRLHC NIFSYDYSGY GASSGRPSER NLYADIDAAW QALRTRYGIS 180
  181 PDSIILYGQS IGTVPTVDLA SRYECAAVVL HSPLTSGMRV AFPDTKKTYC FDAFPNIEKV 240
  241 SKITSPVLII HGTEDEVIDF SHGLALYERC PKAVEPLWVE GAGHNDIELY SQYLERLRRF 300
  301 ISQELPSQRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	2d5lA
Description:	No description for 2d5lA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits