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View Structure Prediction Details

Protein: NA102_ARATH
Organism: Arabidopsis thaliana
Length: 312 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NA102_ARATH.

Description E-value Query
Range
Subject
Range
gi|23397338 - gi|23397338|gb|AAK76517.2| unknown protein [Arabidopsis thaliana]
459.0 [0..7] [312..1]
gi|31322572 - gi|31322572|gb|AAP35051.1| NAC-domain protein 5-7 [Brassica napus]
338.0 [0..44] [312..1]
gi|66394512, gi|... - gi|66394512|gb|AAY46122.1| NAC domain protein NAC2 [Glycine max], gi|62546185|gb|AAX85979.1| NAC2 pr...
300.0 [0..44] [308..1]

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Predicted Domain #1
Region A:
Residues: [1-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFALFSSIS IFEINHKDPP IRRFIKTQNR ILSTRKQQGT FPKMKAELNL PAGFRFHPTD  60
   61 EELVKFYLCR RCASEPINVP VIAEIDLYKF NPWELPEMAL YGEKEWYFFS HRDRKYPNGS 120
  121 RPNRAAGTGY WKATGADKPI GKPKTLGIKK ALVFYAGKAP KGIKTNWIMH EYRLANVDRS 180
  181 ASTNKKNNLR LDDWVLCRIY NKKGTMEKY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.39794
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [210-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPAAAEKPTE KMSTSDSRCS SHVISPDVTC SDNWEVESEP KWINLEDALE AFNDDTSMFS  60
   61 SIGLLQNDAF VPQFQYQSSD FVDSFQDPFE QKPFLNWNFA PQG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle