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View Structure Prediction Details

Protein: gi|51536604, gi|...
Organism: Arabidopsis thaliana
Length: 572 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51536604, gi|....

Description E-value Query
Range
Subject
Range
gi|71147368, gi|... - gi|71281628|ref|YP_268077.1| choline dehydrogenase [Colwellia psychrerythraea 34H], gi|71147368|gb|A...
469.0 [0..43] [567..3]

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Predicted Domain #1
Region A:
Residues: [1-572]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDRFWSWRL FVALSLFLHS PICSSDKAPN YSFMRDATGS PTTSYYDYII IGGGTAGCPL  60
   61 AATLSQNASV LLLERGDSPY NNPNITRLSA FGAALSDLSE SSPSQRFVSE DGVINARARV 120
  121 LGGGSALNAG FYTRAGTKYV RNMGWDGALA NESYQWVEAK VAFQPPMGRW QTAVRDGLLE 180
  181 AGIVPNNGFT YDHINGTKFG GTIFDRNGNR HTAADLLEYA DPKGITVLLH ATVHRILFRT 240
  241 RGTTKPIANG VVYRDRTGQA HRAYLKEGAL SEIILSAGTL GSPQLLMLSG VGPSAQLQAQ 300
  301 NITVVMDQPH VGQGMYDNPM NAVFVPSPVP VEVSLIEVVG ITGEGTYVEA AGGENFGGGG 360
  361 GGSSGSSSTR DYYAMFSPRA TLLESNSMTK LSSAQPFQGG FLLEKVMGPL STGHLELKTR 420
  421 NPKDNPIVTF NYFQHPDDLK RCVRGIQTIE RVVQSKAFSR YKYADVSFEY LLNLTASTPV 480
  481 NLRPPRSGPG ASLPPSAEEF CQHTVTTIWH YHGGCVVGRV VDGDYKVIGI DRLRVIDMST 540
  541 VGYCPGTNPQ ATVMMLGRYM GVKILRERLT KK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.39794
Match: 1ju2A
Description: Hydroxynitrile lyase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity 1.52511707514198 bayes_pls_golite062009
catalytic activity 1.03127962968326 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 0.656008173687956 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 0.222408031443598 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle