YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: TCP4_ARATH
Organism: Arabidopsis thaliana
Length: 420 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TCP4_ARATH.

Description E-value Query
Range
Subject
Range
gi|8777486 - gi|8777486|dbj|BAA97066.1| unnamed protein product [Arabidopsis thaliana]
315.0 [0..15] [420..1]

Back

Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD  60
   61 RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI DELAELPPWN PADAIRLAAA 120
  121 NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI 180
  181 ADTIKSFFPV IGSSTEAPSN HNLMHNYHHQ HPPDLLSRT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [220-420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSQNQDLRLS LQSFPDGPPS LLHHQHHHHT SASASEPTLF YGQSNPLGFD TSSWEQQSSE  60
   61 FGRIQRLVAW NSGGGGGATD TGNGGGFLFA PPTPSTTSFQ PVLGQSQQLY SQRGPLQSSY 120
  121 SPMIRAWFDP HHHHQSISTD DLNHHHHLPP PVHQSAIPGI GFASGEFSSG FRIPARFQGQ 180
  181 EEEQHDGLTH KPSSASSISR H

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle