YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|16930419, gi|...
Organism: Arabidopsis thaliana
Length: 379 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16930419, gi|....

Description E-value Query
Range
Subject
Range
gi|68387058 - gi|68387058|ref|XP_683624.1| PREDICTED: similar to XPA binding protein 1 isoform 1 [Danio rerio]
286.0 [0..6] [375..12]

Back

Predicted Domain #1
Region A:
Residues: [1-259]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPMESSSEQ DIVEESQKLV DSLDKLRVSA ASSSSNFKKK PIIIIVVGMA GSGKTSFLHR  60
   61 LVCHTFDSKS HGYVVNLDPA VMSLPFGANI DIRDTVKYKE VMKQYNLGPN GGILTSLNLF 120
  121 ATKFDEVVSV IEKRADQLDY VLVDTPGQIE IFTWSASGAI ITEAFASTFP TVVTYVVDTP 180
  181 RSSSPITFMS NMLYACSILY KTRLPLVLAF NKTDVADHKF ALEWMEDFEV FQAAIQSDNS 240
  241 YTATLANSLS LSLYEFYRN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.30103
Match: 1yr6A
Description: PAB0955 crystal structure : a GTPase in Apo form from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.470983068319171 bayes_pls_golite062009
hydrolase activity 0.0582794297634999 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [260-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRSVGVSAIS GAGMDGFFKA IEASAEEYME TYKADLDMRK ADKERLEEER KKHEMEKLRK  60
   61 DMESSQGGTV VLNTGLKDRD ATEKMMLEED DEDFQVEDEE DSDDAIDEDD EDDETKHYYL 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.39794
Match: 1g7rA
Description: Initiation factor IF2/eIF5b, domains 2 and 4; Initiation factor IF2/eIF5b, domain 3; Initiation factor IF2/eIF5b, N-terminal (G) domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle